Wall clock time and date at job start Mon Mar 30 2020 20:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.44276 * 111.00114 * 2 1 4 4 C 1.54060 * 111.97690 * 219.31651 * 3 2 1 5 5 C 1.54291 * 112.28591 * 318.91201 * 4 3 2 6 6 C 1.50462 * 113.03804 * 318.30081 * 5 4 3 7 7 C 1.52999 * 109.67768 * 332.27715 * 6 5 4 8 8 C 1.50706 * 109.57451 * 211.96474 * 6 5 4 9 9 H 1.07998 * 119.99512 * 245.79824 * 8 6 5 10 10 C 1.37869 * 120.00208 * 65.79576 * 8 6 5 11 11 N 1.31516 * 119.99662 * 352.00248 * 10 8 6 12 12 Si 1.86796 * 120.00302 * 172.00226 * 10 8 6 13 13 H 1.48503 * 109.46926 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47366 * 240.00205 * 12 10 8 15 15 H 1.48503 * 109.47370 * 119.99845 * 12 10 8 16 16 C 1.54515 * 108.85762 * 92.15141 * 6 5 4 17 17 C 1.45861 * 111.58574 * 282.82509 * 16 6 5 18 18 H 1.09004 * 109.47042 * 298.02341 * 1 2 3 19 19 H 1.09000 * 109.47356 * 58.02734 * 1 2 3 20 20 H 1.09001 * 109.47174 * 178.02971 * 1 2 3 21 21 H 1.09000 * 108.97630 * 339.95596 * 3 2 1 22 22 H 1.08999 * 108.97947 * 98.67013 * 3 2 1 23 23 H 1.08995 * 108.91944 * 79.63551 * 4 3 2 24 24 H 1.09006 * 108.91630 * 198.28764 * 4 3 2 25 25 H 1.09006 * 108.76874 * 197.38667 * 5 4 3 26 26 H 1.08995 * 108.76980 * 79.22192 * 5 4 3 27 27 H 1.09001 * 109.46772 * 336.74371 * 7 6 5 28 28 H 1.09004 * 109.47079 * 96.74250 * 7 6 5 29 29 H 1.09004 * 109.47070 * 216.74397 * 7 6 5 30 30 H 0.96998 * 120.00318 * 4.03297 * 11 10 8 31 31 H 1.08999 * 109.05402 * 43.36804 * 16 6 5 32 32 H 1.09001 * 109.05614 * 162.35310 * 16 6 5 33 33 H 1.08999 * 108.79212 * 182.21344 * 17 16 6 34 34 H 1.09010 * 108.79075 * 300.43494 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9861 1.3469 0.0000 4 6 3.2245 1.4890 -0.9052 5 6 4.1832 0.2868 -0.7782 6 6 4.3623 -0.1761 0.6422 7 6 4.1444 0.9985 1.5981 8 6 5.7549 -0.7227 0.8233 9 1 5.8997 -1.7713 1.0377 10 6 6.8441 0.1156 0.7152 11 7 6.6826 1.3533 0.3009 12 14 8.5491 -0.5063 1.1573 13 1 8.4617 -1.9236 1.5920 14 1 9.1056 0.3169 2.2609 15 1 9.4356 -0.4070 -0.0299 16 6 3.3281 -1.2847 0.9404 17 6 1.9986 -0.7306 1.1705 18 1 -0.3633 0.4829 0.9072 19 1 -0.3634 0.5442 -0.8717 20 1 -0.3633 -1.0271 -0.0353 21 1 1.2091 2.0249 -0.3533 22 1 2.2582 1.6222 1.0190 23 1 2.8972 1.5721 -1.9415 24 1 3.7608 2.3974 -0.6303 25 1 5.1561 0.5699 -1.1801 26 1 3.7892 -0.5398 -1.3694 27 1 4.3204 1.9350 1.0689 28 1 3.1203 0.9786 1.9707 29 1 4.8375 0.9187 2.4357 30 1 5.7912 1.6943 0.1273 31 1 3.2866 -1.9697 0.0935 32 1 3.6419 -1.8347 1.8276 33 1 1.3163 -1.5449 1.4144 34 1 2.0448 -0.0480 2.0191 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261116745.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:21 Heat of formation + Delta-G solvation = 2.130673 kcal Electronic energy + Delta-G solvation = -13867.507515 eV Core-core repulsion = 11800.250512 eV Total energy + Delta-G solvation = -2067.257003 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.05700 -36.94604 -33.51969 -33.35420 -29.05617 -28.53753 -26.84282 -25.05035 -24.17152 -20.86845 -20.01708 -18.53106 -16.75019 -16.54807 -15.98395 -15.74228 -15.52231 -14.70050 -14.16258 -13.95670 -13.79561 -13.19778 -12.83242 -12.61656 -12.46189 -12.34221 -12.17108 -12.02838 -11.92137 -11.64931 -11.23320 -11.06223 -10.79105 -10.42284 -10.04737 -9.05036 -8.35133 -6.14271 1.53574 1.61615 1.77648 2.62631 3.08346 3.32799 3.98693 4.05605 4.23334 4.34106 4.46465 4.49180 4.62674 4.65506 4.74031 4.85381 4.91305 4.96532 5.03258 5.08309 5.11036 5.24795 5.29501 5.33501 5.44537 5.58290 5.85831 6.08434 6.25166 6.29828 6.38418 6.48091 6.90709 7.64513 8.98454 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.063190 B = 0.011693 C = 0.010779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.002329 B = 2393.940398 C = 2597.031694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.547 5.547 3 C 0.046 3.954 4 C -0.102 4.102 5 C -0.087 4.087 6 C 0.050 3.950 7 C -0.132 4.132 8 C -0.603 4.603 9 H 0.033 0.967 10 C -0.025 4.025 11 N -0.945 5.945 12 Si 1.107 2.893 13 H -0.278 1.278 14 H -0.282 1.282 15 H -0.285 1.285 16 C -0.092 4.092 17 C 0.060 3.940 18 H 0.031 0.969 19 H 0.075 0.925 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.024 0.976 26 H 0.030 0.970 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.010 0.990 30 H 0.277 0.723 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.751 -1.099 1.004 10.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.271 5.271 3 C -0.083 4.083 4 C -0.140 4.140 5 C -0.126 4.126 6 C 0.049 3.951 7 C -0.188 4.188 8 C -0.641 4.641 9 H 0.051 0.949 10 C -0.224 4.224 11 N -0.584 5.584 12 Si 0.932 3.068 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.211 1.211 16 C -0.130 4.130 17 C -0.067 4.067 18 H 0.049 0.951 19 H 0.093 0.907 20 H 0.093 0.907 21 H 0.092 0.908 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.030 0.970 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.022 -0.916 0.602 9.088 hybrid contribution -1.396 -0.012 0.503 1.484 sum -10.418 -0.928 1.105 10.517 Atomic orbital electron populations 1.22505 0.85771 1.02702 1.00950 1.61493 1.08540 1.14897 1.42204 1.22235 0.96376 0.89764 0.99880 1.21893 0.95591 0.97463 0.99066 1.21277 0.96290 0.96328 0.98659 1.18063 0.93176 0.92268 0.91576 1.22512 0.98839 0.98873 0.98625 1.22411 0.93391 0.95901 1.52402 0.94852 1.26798 1.07015 0.94869 0.93720 1.70779 1.27445 1.17430 1.42758 0.83051 0.72003 0.75128 0.76655 1.20340 1.20847 1.21147 1.20466 0.94551 0.98156 0.99845 1.21076 0.96322 0.98112 0.91183 0.95083 0.90658 0.90695 0.90824 0.92811 0.92731 0.93794 0.95725 0.95149 0.94500 0.91529 0.97027 0.90925 0.94036 0.93376 0.90551 0.94118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.19 127.69 1.17 1.84 16 2 N -0.55 -17.58 4.48 -938.14 -4.21 -21.78 16 3 C 0.05 1.53 5.12 87.15 0.45 1.97 16 4 C -0.10 -4.05 5.37 31.39 0.17 -3.88 16 5 C -0.09 -4.21 3.96 30.21 0.12 -4.09 16 6 C 0.05 2.43 0.49 -53.23 -0.03 2.40 16 7 C -0.13 -6.16 6.23 71.98 0.45 -5.71 16 8 C -0.60 -34.20 7.66 25.60 0.20 -34.00 16 9 H 0.03 1.92 7.77 -2.91 -0.02 1.90 16 10 C -0.02 -1.42 4.83 84.65 0.41 -1.01 16 11 N -0.94 -56.92 12.58 21.44 0.27 -56.65 16 12 Si 1.11 51.85 29.91 68.60 2.05 53.90 16 13 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 15 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 16 C -0.09 -3.87 4.61 28.92 0.13 -3.74 16 17 C 0.06 2.02 4.89 83.94 0.41 2.43 16 18 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 19 H 0.07 1.58 8.01 -2.39 -0.02 1.56 16 20 H 0.07 1.58 8.05 -2.39 -0.02 1.56 16 21 H 0.07 2.05 7.49 -2.39 -0.02 2.03 16 22 H 0.05 1.87 4.14 -2.39 -0.01 1.86 16 23 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.04 1.82 6.68 -2.38 -0.02 1.81 16 25 H 0.02 1.36 5.85 -2.38 -0.01 1.34 16 26 H 0.03 1.45 7.38 -2.39 -0.02 1.44 16 27 H 0.04 1.77 4.46 -2.39 -0.01 1.76 16 28 H 0.07 2.67 3.10 -2.38 -0.01 2.66 16 29 H 0.01 0.55 7.64 -2.38 -0.02 0.54 16 30 H 0.28 16.32 3.61 -92.71 -0.33 15.98 16 31 H 0.04 1.79 7.59 -2.39 -0.02 1.78 16 32 H 0.05 2.03 8.02 -2.39 -0.02 2.01 16 33 H 0.08 2.19 7.74 -2.39 -0.02 2.17 16 34 H 0.04 1.38 5.37 -2.38 -0.01 1.37 16 Total: -1.00 -63.12 239.82 3.10 -60.02 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.51 Total: 8.31 kcal Atomic # 6 Polarization: -47.27 SS G_CDS: 3.48 Total: -43.79 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -3.94 Total: -78.44 kcal Atomic # 14 Polarization: 51.85 SS G_CDS: 2.05 Total: 53.90 kcal Total: -63.12 3.10 -60.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261116745.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.146 kcal (2) G-P(sol) polarization free energy of solvation -63.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds