Wall clock time and date at job start Mon Mar 30 2020 20:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47550 * 2 1 4 4 C 1.53003 * 109.46635 * 120.00316 * 2 1 3 5 5 C 1.50701 * 110.28737 * 301.47024 * 4 2 1 6 6 H 1.07994 * 119.99638 * 358.30387 * 5 4 2 7 7 C 1.37881 * 119.99757 * 178.57371 * 5 4 2 8 8 N 1.31515 * 120.00119 * 359.73310 * 7 5 4 9 9 Si 1.86796 * 119.99894 * 179.72493 * 7 5 4 10 10 H 1.48508 * 109.46872 * 60.00468 * 9 7 5 11 11 H 1.48496 * 109.47453 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47659 * 300.00800 * 9 7 5 13 13 C 1.54255 * 110.41437 * 63.66015 * 4 2 1 14 14 C 1.54385 * 105.06294 * 118.93592 * 13 4 2 15 15 N 1.48561 * 104.59183 * 23.85204 * 14 13 4 16 16 C 1.46898 * 110.99961 * 200.95747 * 15 14 13 17 17 C 1.48558 * 104.22585 * 320.51957 * 15 14 13 18 18 H 1.09004 * 109.47226 * 59.99889 * 1 2 3 19 19 H 1.08998 * 109.47617 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47124 * 299.99857 * 1 2 3 21 21 H 1.08998 * 109.46826 * 239.99494 * 2 1 3 22 22 H 1.09000 * 109.47207 * 178.08982 * 3 2 1 23 23 H 1.09000 * 109.47389 * 298.09614 * 3 2 1 24 24 H 1.09011 * 109.46998 * 58.09298 * 3 2 1 25 25 H 0.96996 * 120.00055 * 179.97438 * 8 7 5 26 26 H 1.08999 * 110.32592 * 237.83429 * 13 4 2 27 27 H 1.09004 * 110.32245 * 0.04287 * 13 4 2 28 28 H 1.08999 * 110.41238 * 265.07938 * 14 13 4 29 29 H 1.08993 * 110.51083 * 142.68186 * 14 13 4 30 30 H 1.08998 * 109.46908 * 175.42382 * 16 15 14 31 31 H 1.08996 * 109.47216 * 295.41795 * 16 15 14 32 32 H 1.08996 * 109.47332 * 55.42354 * 16 15 14 33 33 H 1.08997 * 110.41003 * 280.70386 * 17 15 14 34 34 H 1.08997 * 110.41226 * 158.26081 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2493 5 6 1.5183 -0.0466 2.4917 6 1 0.9019 0.8362 2.4084 7 6 1.8326 -0.5532 3.7350 8 7 2.5833 -1.6283 3.8364 9 14 1.1924 0.2875 5.2753 10 1 -0.2925 0.2933 5.2552 11 1 1.6688 -0.4471 6.4746 12 1 1.6921 1.6852 5.3205 13 6 1.6144 -2.2039 1.2258 14 6 2.9367 -3.0008 1.2253 15 7 3.9314 -2.0758 1.8270 16 6 5.2999 -2.4628 1.4593 17 6 3.5835 -0.7471 1.2610 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8933 -0.5139 -0.8899 22 1 3.1295 1.4425 0.0343 23 1 1.7049 1.9463 -0.9065 24 1 1.6491 1.9661 0.8725 25 1 2.8048 -1.9845 4.7110 26 1 1.0283 -2.4436 2.1130 27 1 1.0422 -2.4193 0.3234 28 1 3.2250 -3.2583 0.2062 29 1 2.8399 -3.9016 1.8313 30 1 6.0024 -1.7239 1.8448 31 1 5.5287 -3.4391 1.8866 32 1 5.3842 -2.5126 0.3737 33 1 3.9729 -0.6520 0.2474 34 1 3.9722 0.0498 1.8950 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261136114.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:34 Heat of formation + Delta-G solvation = 11.238375 kcal Electronic energy + Delta-G solvation = -13863.715768 eV Core-core repulsion = 11796.853705 eV Total energy + Delta-G solvation = -2066.862063 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.31956 -34.48609 -32.05552 -29.62193 -27.58017 -26.16316 -24.91201 -23.59463 -20.66542 -19.71902 -18.39185 -15.68027 -14.86797 -14.12617 -13.98133 -13.58189 -12.91697 -12.65037 -12.24162 -12.11881 -11.74851 -11.31055 -11.14405 -10.81266 -10.60675 -10.53999 -10.32176 -10.24440 -10.10475 -9.93350 -9.78468 -9.18480 -8.77587 -8.40077 -8.10395 -6.88086 -5.53057 -3.75090 3.43756 3.48937 3.51950 4.62307 5.35702 5.54215 5.96446 5.98974 6.03206 6.12017 6.15772 6.35316 6.40485 6.46465 6.57022 6.65209 6.67474 6.70705 6.74931 6.85268 6.90718 7.14810 7.21822 7.25553 7.28974 7.50184 7.68018 7.95345 8.14515 8.36333 8.53304 8.70585 9.20699 9.85274 11.34198 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.025502 B = 0.020056 C = 0.013863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.697457 B = 1395.738355 C = 2019.303692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 C -0.133 4.133 4 C 0.079 3.921 5 C -0.520 4.520 6 H 0.053 0.947 7 C 0.070 3.930 8 N -0.817 5.817 9 Si 0.869 3.131 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.095 4.095 14 C 0.056 3.944 15 N -0.440 5.440 16 C 0.011 3.989 17 C 0.062 3.938 18 H 0.026 0.974 19 H 0.046 0.954 20 H 0.063 0.937 21 H 0.036 0.964 22 H 0.044 0.956 23 H 0.027 0.973 24 H 0.062 0.938 25 H 0.251 0.749 26 H 0.074 0.926 27 H 0.024 0.976 28 H 0.002 0.998 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.001 0.999 33 H -0.006 1.006 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 0.043 -5.319 5.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.097 4.097 3 C -0.190 4.190 4 C 0.078 3.922 5 C -0.558 4.558 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.450 5.450 9 Si 0.697 3.303 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.134 4.134 14 C -0.073 4.073 15 N -0.162 5.162 16 C -0.138 4.138 17 C -0.066 4.066 18 H 0.046 0.954 19 H 0.065 0.935 20 H 0.082 0.918 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.046 0.954 24 H 0.081 0.919 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.020 0.980 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.019 0.981 33 H 0.012 0.988 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.584 -0.122 -4.569 4.608 hybrid contribution -0.058 0.367 0.086 0.381 sum 0.526 0.245 -4.483 4.520 Atomic orbital electron populations 1.21743 0.96349 1.00787 1.00092 1.21096 0.95109 0.95635 0.97834 1.21737 1.00280 0.97062 0.99965 1.18811 0.90060 0.91260 0.92066 1.20744 1.33165 1.12391 0.89500 0.92893 1.25047 0.95194 0.95311 0.98088 1.70325 1.32783 1.19768 1.22138 0.87079 0.79111 0.79773 0.84311 1.20821 1.21776 1.20836 1.22330 0.95141 0.97129 0.98767 1.22782 0.94606 0.96595 0.93286 1.65695 0.98037 1.01414 1.51022 1.22573 0.94816 1.00346 0.96107 1.23247 0.98864 0.91772 0.92745 0.95443 0.93534 0.91790 0.94524 0.93687 0.95351 0.91935 0.93861 0.90769 0.95717 0.98007 0.92564 0.92915 0.93027 0.98097 0.98785 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.72 37.16 0.32 -2.20 16 2 C -0.08 -1.60 1.96 -90.62 -0.18 -1.77 16 3 C -0.13 -2.54 8.75 37.15 0.32 -2.22 16 4 C 0.08 1.85 0.32 -154.28 -0.05 1.80 16 5 C -0.52 -13.46 6.47 -34.44 -0.22 -13.68 16 6 H 0.05 1.38 5.81 -52.49 -0.30 1.08 16 7 C 0.07 1.87 4.89 -17.82 -0.09 1.78 16 8 N -0.82 -22.30 8.96 55.43 0.50 -21.80 16 9 Si 0.87 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C -0.10 -2.22 5.06 -25.35 -0.13 -2.35 16 14 C 0.06 1.25 6.15 -2.18 -0.01 1.23 16 15 N -0.44 -10.34 3.34 -238.24 -0.80 -11.13 16 16 C 0.01 0.23 9.53 60.06 0.57 0.80 16 17 C 0.06 1.47 4.00 -2.18 -0.01 1.46 16 18 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 19 H 0.05 0.88 6.75 -51.93 -0.35 0.53 16 20 H 0.06 1.30 6.63 -51.93 -0.34 0.95 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.04 0.85 7.08 -51.93 -0.37 0.48 16 23 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 1.26 6.81 -51.92 -0.35 0.91 16 25 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.07 1.91 6.86 -51.93 -0.36 1.56 16 27 H 0.02 0.52 6.66 -51.93 -0.35 0.18 16 28 H 0.00 0.04 7.90 -51.93 -0.41 -0.37 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.00 0.01 7.97 -51.93 -0.41 -0.40 16 33 H -0.01 -0.13 7.50 -51.93 -0.39 -0.52 16 34 H 0.06 1.64 7.85 -51.93 -0.41 1.23 16 LS Contribution 253.99 15.07 3.83 3.83 Total: -1.00 -26.82 253.99 -6.67 -33.49 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -5.72 Total: -5.22 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 0.53 Total: -15.15 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: -0.30 Total: -32.93 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -26.82 -6.67 -33.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136114.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.730 kcal (2) G-P(sol) polarization free energy of solvation -26.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds