Wall clock time and date at job start Mon Mar 30 2020 20:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47223 * 2 1 4 4 C 1.53001 * 109.47283 * 120.00564 * 2 1 3 5 5 C 1.50697 * 110.36534 * 299.26961 * 4 2 1 6 6 H 1.08001 * 120.00303 * 1.47599 * 5 4 2 7 7 C 1.37881 * 119.99882 * 181.48098 * 5 4 2 8 8 N 1.31519 * 119.99922 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00007 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46980 * 60.00197 * 9 7 5 11 11 H 1.48504 * 109.46812 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47240 * 299.99889 * 9 7 5 13 13 C 1.54571 * 110.42052 * 176.96466 * 4 2 1 14 14 C 1.54377 * 105.08835 * 241.12265 * 13 4 2 15 15 N 1.48555 * 104.59533 * 336.15548 * 14 13 4 16 16 C 1.46905 * 110.99889 * 159.04089 * 15 14 13 17 17 C 1.48560 * 104.22165 * 39.48960 * 15 14 13 18 18 H 1.09004 * 109.46936 * 299.99936 * 1 2 3 19 19 H 1.09006 * 109.47053 * 59.99242 * 1 2 3 20 20 H 1.08996 * 109.47663 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46842 * 240.00580 * 2 1 3 22 22 H 1.08999 * 109.47424 * 300.00136 * 3 2 1 23 23 H 1.09000 * 109.46738 * 60.00516 * 3 2 1 24 24 H 1.09002 * 109.46974 * 180.02562 * 3 2 1 25 25 H 0.96996 * 120.00027 * 180.02562 * 8 7 5 26 26 H 1.08995 * 110.29758 * 122.22178 * 13 4 2 27 27 H 1.09004 * 110.32005 * 0.03159 * 13 4 2 28 28 H 1.09005 * 110.40645 * 217.37892 * 14 13 4 29 29 H 1.08998 * 110.51556 * 94.99504 * 14 13 4 30 30 H 1.09004 * 109.47165 * 304.58523 * 16 15 14 31 31 H 1.09002 * 109.47194 * 64.58473 * 16 15 14 32 32 H 1.08994 * 109.46982 * 184.58358 * 16 15 14 33 33 H 1.09002 * 110.41441 * 79.29212 * 17 15 14 34 34 H 1.09002 * 110.41248 * 201.61513 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5636 -0.0165 2.4930 6 1 0.9309 0.8549 2.4112 7 6 1.9356 -0.4841 3.7357 8 7 2.7066 -1.5450 3.8353 9 14 1.3457 0.3899 5.2775 10 1 -0.1386 0.3745 5.3180 11 1 1.8803 -0.3054 6.4759 12 1 1.8259 1.7950 5.2645 13 6 3.5836 -0.8009 1.2335 14 6 3.9081 -2.3102 1.2274 15 7 2.7072 -2.9537 1.8195 16 6 2.6311 -4.3720 1.4443 17 6 1.5665 -2.1907 1.2507 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5140 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8932 -0.5138 -0.8901 22 1 1.6767 1.9564 -0.8899 23 1 1.6767 1.9562 0.8901 24 1 3.1300 1.4424 -0.0005 25 1 2.9680 -1.8741 4.7095 26 1 3.9956 -0.3286 2.1253 27 1 3.9781 -0.3252 0.3356 28 1 4.7879 -2.5122 1.8385 29 1 4.0652 -2.6630 0.2082 30 1 2.6569 -4.4625 0.3584 31 1 3.4780 -4.9074 1.8737 32 1 1.7021 -4.7985 1.8226 33 1 1.3557 -2.5233 0.2343 34 1 0.6824 -2.3046 1.8781 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261136115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:35 Heat of formation + Delta-G solvation = 11.241644 kcal Electronic energy + Delta-G solvation = -13861.656301 eV Core-core repulsion = 11794.794379 eV Total energy + Delta-G solvation = -2066.861921 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.30282 -34.48570 -32.05464 -29.61166 -27.58532 -26.15326 -24.92177 -23.58815 -20.66842 -19.71530 -18.39157 -15.67861 -14.86804 -14.12167 -13.98142 -13.58250 -12.91402 -12.65143 -12.24131 -12.12192 -11.75372 -11.30885 -11.14374 -10.81324 -10.60611 -10.54095 -10.31807 -10.24186 -10.10342 -9.92823 -9.78619 -9.18047 -8.77975 -8.40338 -8.10475 -6.88009 -5.52965 -3.75180 3.43748 3.48892 3.51914 4.62250 5.35848 5.54006 5.96578 5.98870 6.02865 6.12163 6.15812 6.35326 6.40402 6.46708 6.57100 6.65233 6.67237 6.70556 6.74729 6.85360 6.90935 7.14817 7.21851 7.25433 7.29129 7.49837 7.67870 7.95037 8.14354 8.36336 8.53354 8.70493 9.20636 9.85190 11.34131 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.025482 B = 0.020051 C = 0.013855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.531431 B = 1396.090167 C = 2020.373647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 C -0.133 4.133 4 C 0.079 3.921 5 C -0.520 4.520 6 H 0.053 0.947 7 C 0.070 3.930 8 N -0.817 5.817 9 Si 0.869 3.131 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.096 4.096 14 C 0.055 3.945 15 N -0.439 5.439 16 C 0.011 3.989 17 C 0.062 3.938 18 H 0.063 0.937 19 H 0.027 0.973 20 H 0.043 0.957 21 H 0.036 0.964 22 H 0.027 0.973 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.251 0.749 26 H 0.073 0.927 27 H 0.024 0.976 28 H 0.056 0.944 29 H 0.002 0.998 30 H 0.001 0.999 31 H 0.051 0.949 32 H 0.052 0.948 33 H -0.006 1.006 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 -0.404 -5.317 5.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 C -0.190 4.190 4 C 0.078 3.922 5 C -0.558 4.558 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.450 5.450 9 Si 0.697 3.303 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.134 4.134 14 C -0.073 4.073 15 N -0.161 5.161 16 C -0.138 4.138 17 C -0.066 4.066 18 H 0.082 0.918 19 H 0.047 0.953 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.046 0.954 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.012 0.988 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.039 -0.556 -4.568 4.602 hybrid contribution -0.320 0.175 0.084 0.374 sum -0.359 -0.381 -4.483 4.514 Atomic orbital electron populations 1.21741 0.96542 1.00620 1.00171 1.21092 0.94902 0.95840 0.97831 1.21743 1.00311 0.96837 1.00097 1.18858 0.90885 0.90364 0.92047 1.20738 1.32431 1.13151 0.89471 0.92889 1.25050 0.95688 0.94815 0.98089 1.70330 1.32547 1.19946 1.22167 0.87077 0.78959 0.79910 0.84326 1.20831 1.21774 1.20821 1.22387 0.98959 0.93274 0.98807 1.22780 0.94653 0.96502 0.93354 1.65702 1.01435 0.97965 1.51031 1.22576 1.00863 0.94336 0.96070 1.23240 0.94588 0.96105 0.92681 0.91820 0.95344 0.93763 0.94524 0.95422 0.91815 0.93524 0.93862 0.90796 0.95704 0.92580 0.97986 0.98099 0.93028 0.92912 0.98819 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.75 37.16 0.33 -2.22 16 2 C -0.08 -1.59 1.96 -90.62 -0.18 -1.77 16 3 C -0.13 -2.53 8.73 37.16 0.32 -2.20 16 4 C 0.08 1.86 0.32 -154.11 -0.05 1.81 16 5 C -0.52 -13.46 6.46 -34.44 -0.22 -13.68 16 6 H 0.05 1.38 5.82 -52.49 -0.31 1.08 16 7 C 0.07 1.86 4.89 -17.82 -0.09 1.78 16 8 N -0.82 -22.29 8.96 55.43 0.50 -21.80 16 9 Si 0.87 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C -0.10 -2.23 5.07 -25.18 -0.13 -2.36 16 14 C 0.06 1.24 6.15 -2.19 -0.01 1.23 16 15 N -0.44 -10.33 3.34 -238.23 -0.80 -11.13 16 16 C 0.01 0.22 9.53 60.07 0.57 0.80 16 17 C 0.06 1.47 4.05 -2.18 -0.01 1.46 16 18 H 0.06 1.29 6.71 -51.93 -0.35 0.94 16 19 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 20 H 0.04 0.83 7.20 -51.93 -0.37 0.46 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 1.29 6.68 -51.93 -0.35 0.94 16 24 H 0.05 0.88 6.70 -51.93 -0.35 0.53 16 25 H 0.25 6.81 8.31 -40.82 -0.34 6.48 16 26 H 0.07 1.91 6.87 -51.93 -0.36 1.55 16 27 H 0.02 0.52 6.62 -51.93 -0.34 0.18 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.00 0.04 7.90 -51.93 -0.41 -0.37 16 30 H 0.00 0.01 7.97 -51.93 -0.41 -0.40 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H -0.01 -0.14 7.53 -51.93 -0.39 -0.53 16 34 H 0.06 1.63 7.85 -51.93 -0.41 1.23 16 LS Contribution 254.07 15.07 3.83 3.83 Total: -1.00 -26.82 254.07 -6.67 -33.49 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -5.72 Total: -5.22 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 0.54 Total: -15.16 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: -0.30 Total: -32.92 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -26.82 -6.67 -33.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.731 kcal (2) G-P(sol) polarization free energy of solvation -26.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds