Wall clock time and date at job start Mon Mar 30 2020 20:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47539 * 2 1 4 4 C 1.52997 * 109.90602 * 301.10658 * 3 2 1 5 5 C 1.53985 * 109.92099 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.31320 * 120.40708 * 5 3 2 7 7 C 1.50700 * 110.30856 * 358.33800 * 5 3 2 8 8 H 1.07999 * 119.99988 * 1.38768 * 7 5 3 9 9 C 1.37885 * 120.00047 * 181.38948 * 7 5 3 10 10 N 1.31516 * 119.99913 * 180.02562 * 9 7 5 11 11 Si 1.86805 * 119.99854 * 359.72512 * 9 7 5 12 12 H 1.48498 * 109.46909 * 90.00086 * 11 9 7 13 13 H 1.48497 * 109.46701 * 209.99996 * 11 9 7 14 14 H 1.48500 * 109.46867 * 330.00101 * 11 9 7 15 15 C 1.54601 * 105.22788 * 239.37430 * 5 3 2 16 16 C 1.55103 * 102.84538 * 338.14870 * 15 5 3 17 17 N 1.47908 * 109.91666 * 62.40806 * 3 2 1 18 18 C 1.46899 * 110.99869 * 265.20096 * 17 3 2 19 19 H 1.08997 * 109.47178 * 299.99980 * 1 2 3 20 20 H 1.09004 * 109.47075 * 59.99962 * 1 2 3 21 21 H 1.09003 * 109.47538 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47010 * 239.99537 * 2 1 3 23 23 H 1.09004 * 109.47075 * 120.00037 * 2 1 3 24 24 H 1.09000 * 109.47081 * 298.88837 * 4 3 2 25 25 H 1.08997 * 109.47637 * 58.89063 * 4 3 2 26 26 H 1.09010 * 109.47224 * 178.89701 * 4 3 2 27 27 H 0.97001 * 119.99646 * 180.02562 * 10 9 7 28 28 H 1.09003 * 110.72458 * 96.44502 * 15 5 3 29 29 H 1.09005 * 110.72391 * 219.73405 * 15 5 3 30 30 H 1.08996 * 110.59657 * 278.87550 * 16 15 5 31 31 H 1.09001 * 110.68559 * 155.77960 * 16 15 5 32 32 H 1.08999 * 109.47349 * 59.99804 * 18 17 3 33 33 H 1.09007 * 109.47088 * 179.97438 * 18 17 3 34 34 H 1.08997 * 109.47434 * 299.99531 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5130 2.1813 -1.2317 5 6 3.5799 1.4544 0.0006 6 1 3.9546 1.9746 -0.8809 7 6 4.1139 0.0458 0.0421 8 1 3.4309 -0.7908 0.0434 9 6 5.4744 -0.1750 0.0784 10 7 5.9404 -1.4043 0.1140 11 14 6.6560 1.2719 0.0684 12 1 6.9374 1.6907 1.4650 13 1 7.9235 0.8712 -0.5933 14 1 6.0460 2.4039 -0.6744 15 6 3.9795 2.2176 1.2844 16 6 2.7091 3.0495 1.6005 17 7 1.6008 2.1322 1.2325 18 6 0.3556 2.8771 1.0035 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.8763 1.6889 -2.1338 25 1 0.4232 2.1685 -1.2245 26 1 1.8644 3.2131 -1.2145 27 1 6.8976 -1.5595 0.1399 28 1 4.1963 1.5220 2.0950 29 1 4.8323 2.8697 1.0957 30 1 2.6803 3.9523 0.9905 31 1 2.6661 3.2987 2.6608 32 1 -0.4283 2.1873 0.6907 33 1 0.0548 3.3743 1.9257 34 1 0.5160 3.6223 0.2243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261152634.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:45 Heat of formation + Delta-G solvation = 12.211471 kcal Electronic energy + Delta-G solvation = -13764.426089 eV Core-core repulsion = 11697.606223 eV Total energy + Delta-G solvation = -2066.819867 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.35394 -33.23638 -32.97529 -31.08855 -28.73098 -26.58415 -25.47150 -22.83369 -22.05058 -20.12749 -17.84006 -16.40153 -15.27690 -14.91454 -14.36585 -13.94439 -13.59471 -12.94421 -12.50378 -12.32688 -12.13479 -11.72045 -11.52543 -11.41083 -11.16504 -11.09866 -10.52946 -10.25003 -10.16401 -9.90608 -9.74005 -9.57762 -9.22103 -8.65777 -8.48581 -7.72444 -5.99263 -3.97176 3.32167 3.40986 3.41657 4.47700 4.65025 5.28971 5.48967 5.51942 5.70954 5.74971 5.79927 5.94570 5.96609 6.02202 6.10251 6.15293 6.20932 6.24410 6.33349 6.55124 6.58292 6.75961 6.82973 6.94044 7.02508 7.11338 7.29498 7.40303 7.73525 7.83754 7.87585 8.61004 9.05947 9.63563 11.12575 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041539 B = 0.014667 C = 0.012284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.903110 B = 1908.534033 C = 2278.875591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.083 4.083 3 C 0.106 3.894 4 C -0.165 4.165 5 C 0.014 3.986 6 H 0.030 0.970 7 C -0.510 4.510 8 H 0.095 0.905 9 C 0.071 3.929 10 N -0.903 5.903 11 Si 0.873 3.127 12 H -0.278 1.278 13 H -0.295 1.295 14 H -0.268 1.268 15 C -0.131 4.131 16 C 0.036 3.964 17 N -0.507 5.507 18 C 0.006 3.994 19 H 0.057 0.943 20 H 0.041 0.959 21 H 0.041 0.959 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.262 0.738 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.244 7.717 0.167 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.121 4.121 3 C 0.017 3.983 4 C -0.224 4.224 5 C -0.006 4.006 6 H 0.048 0.952 7 C -0.548 4.548 8 H 0.112 0.888 9 C -0.130 4.130 10 N -0.542 5.542 11 Si 0.702 3.298 12 H -0.204 1.204 13 H -0.222 1.222 14 H -0.193 1.193 15 C -0.169 4.169 16 C -0.092 4.092 17 N -0.231 5.231 18 C -0.142 4.142 19 H 0.076 0.924 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.086 0.914 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -8.199 7.232 0.588 10.949 hybrid contribution 0.966 1.482 -0.620 1.875 sum -7.233 8.714 -0.033 11.325 Atomic orbital electron populations 1.22107 0.98647 1.00224 1.00712 1.21453 0.92194 0.95339 1.03101 1.21705 0.96425 0.93894 0.86258 1.22456 1.00359 0.99741 0.99811 1.20047 0.90154 0.97358 0.93001 0.95207 1.21416 0.92449 0.91141 1.49804 0.88755 1.24989 0.98194 0.95036 0.94734 1.69893 1.13451 1.19431 1.51413 0.87020 0.80583 0.83774 0.78430 1.20386 1.22222 1.19320 1.22994 0.94573 0.97909 1.01452 1.23189 0.92510 0.94051 0.99417 1.64778 1.02036 1.24719 1.31556 1.22725 0.94327 0.97563 0.99629 0.92410 0.93973 0.93987 0.91395 0.90456 0.92174 0.92812 0.93866 0.92848 0.90445 0.93584 0.95177 0.91426 0.90910 0.92739 0.95738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 8.40 37.16 0.31 -2.28 16 2 C -0.08 -1.66 3.67 -26.74 -0.10 -1.76 16 3 C 0.11 2.11 0.72 -130.54 -0.09 2.02 16 4 C -0.17 -2.87 6.63 37.16 0.25 -2.62 16 5 C 0.01 0.32 2.07 -90.42 -0.19 0.14 16 6 H 0.03 0.72 6.72 -51.93 -0.35 0.38 16 7 C -0.51 -13.91 8.10 -34.44 -0.28 -14.19 16 8 H 0.09 2.70 4.94 -52.49 -0.26 2.45 16 9 C 0.07 2.03 5.46 -17.82 -0.10 1.94 16 10 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 11 Si 0.87 21.77 24.78 -169.99 -4.21 17.56 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.27 -6.45 6.40 56.52 0.36 -6.09 16 15 C -0.13 -2.86 4.86 -24.78 -0.12 -2.98 16 16 C 0.04 0.67 6.55 -1.83 -0.01 0.65 16 17 N -0.51 -9.42 4.92 -223.08 -1.10 -10.51 16 18 C 0.01 0.09 7.89 60.06 0.47 0.57 16 19 H 0.06 0.91 5.82 -51.93 -0.30 0.61 16 20 H 0.04 0.63 6.42 -51.93 -0.33 0.29 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 1.45 7.19 -51.93 -0.37 1.07 16 23 H 0.08 1.74 7.04 -51.93 -0.37 1.38 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.82 4.99 -51.93 -0.26 0.56 16 26 H 0.04 0.73 7.60 -51.92 -0.39 0.33 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.08 1.81 7.86 -51.93 -0.41 1.40 16 29 H 0.05 0.98 6.07 -51.93 -0.32 0.67 16 30 H 0.03 0.52 7.96 -51.93 -0.41 0.11 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.07 1.04 4.84 -51.93 -0.25 0.79 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.02 0.36 6.29 -51.93 -0.33 0.03 16 LS Contribution 243.24 15.07 3.67 3.67 Total: -1.00 -28.89 243.24 -5.94 -34.83 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.22 Total: -0.37 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 0.14 Total: -18.51 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.32 Total: -37.17 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.21 Total: 17.56 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.89 -5.94 -34.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152634.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.040 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds