Wall clock time and date at job start Mon Mar 30 2020 20:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47294 * 2 1 4 4 C 1.53002 * 109.90399 * 65.41985 * 3 2 1 5 5 C 1.53985 * 109.91859 * 186.51956 * 3 2 1 6 6 H 1.09003 * 110.30924 * 239.49524 * 5 3 2 7 7 C 1.50700 * 110.31176 * 1.66520 * 5 3 2 8 8 H 1.08000 * 120.00263 * 65.62549 * 7 5 3 9 9 C 1.37885 * 120.00269 * 245.63029 * 7 5 3 10 10 N 1.31506 * 120.00315 * 172.75215 * 9 7 5 11 11 Si 1.86802 * 119.99414 * 352.75657 * 9 7 5 12 12 H 1.48496 * 109.47531 * 84.63257 * 11 9 7 13 13 H 1.48507 * 109.46490 * 204.62864 * 11 9 7 14 14 H 1.48496 * 109.47327 * 324.62501 * 11 9 7 15 15 C 1.55024 * 104.93122 * 120.52259 * 5 3 2 16 16 C 1.54940 * 102.92439 * 22.10930 * 15 5 3 17 17 N 1.47893 * 109.91630 * 304.32007 * 3 2 1 18 18 C 1.46895 * 111.00811 * 94.80091 * 17 3 2 19 19 H 1.08994 * 109.47451 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47154 * 300.00072 * 1 2 3 21 21 H 1.09007 * 109.47303 * 59.99755 * 1 2 3 22 22 H 1.09002 * 109.47603 * 240.00182 * 2 1 3 23 23 H 1.08998 * 109.47226 * 120.00056 * 2 1 3 24 24 H 1.09003 * 109.47606 * 60.69711 * 4 3 2 25 25 H 1.08996 * 109.47061 * 180.70705 * 4 3 2 26 26 H 1.09009 * 109.46884 * 300.70005 * 4 3 2 27 27 H 0.97000 * 120.00351 * 179.97438 * 10 9 7 28 28 H 1.09000 * 110.81618 * 263.70236 * 15 5 3 29 29 H 1.09000 * 110.78169 * 140.49462 * 15 5 3 30 30 H 1.08997 * 110.66503 * 204.04370 * 16 15 5 31 31 H 1.08997 * 110.80975 * 80.98075 * 16 15 5 32 32 H 1.09004 * 109.47053 * 59.98925 * 18 17 3 33 33 H 1.08995 * 109.48215 * 179.97438 * 18 17 3 34 34 H 1.09004 * 109.46505 * 300.00342 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6495 2.1331 1.3083 5 6 3.5710 1.4576 -0.1644 6 1 4.0385 1.9465 0.6904 7 6 4.0947 0.0527 -0.3157 8 1 3.8316 -0.5310 -1.1854 9 6 4.9099 -0.4876 0.6563 10 7 5.2509 -1.7564 0.5979 11 14 5.5298 0.5827 2.0562 12 1 4.5071 0.6324 3.1317 13 1 6.7890 0.0102 2.5966 14 1 5.7863 1.9561 1.5531 15 6 3.8256 2.2706 -1.4596 16 6 2.5323 3.1121 -1.6005 17 7 1.4688 2.1789 -1.1484 18 6 0.2581 2.9117 -0.7546 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.1002 1.6034 2.1475 25 1 2.0051 3.1633 1.2955 26 1 0.5645 2.1246 1.4138 27 1 5.8246 -2.1364 1.2815 28 1 3.9493 1.6070 -2.3154 29 1 4.6959 2.9170 -1.3457 30 1 2.3735 3.4023 -2.6391 31 1 2.5708 3.9918 -0.9581 32 1 0.5052 3.6260 0.0308 33 1 -0.1411 3.4445 -1.6175 34 1 -0.4878 2.2084 -0.3843 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261152635.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:46 Heat of formation + Delta-G solvation = 2.300118 kcal Electronic energy + Delta-G solvation = -13802.923007 eV Core-core repulsion = 11735.673352 eV Total energy + Delta-G solvation = -2067.249655 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.25142 -33.17540 -32.75498 -31.10834 -28.74783 -26.57657 -25.27630 -22.97056 -21.80963 -19.81734 -17.84049 -16.78573 -15.19777 -14.86970 -14.36418 -13.78472 -13.44855 -12.71418 -12.54045 -12.29456 -12.10926 -11.58812 -11.55912 -11.46540 -11.12510 -10.87158 -10.66543 -10.52650 -10.05229 -9.79377 -9.67203 -9.51288 -9.24263 -8.82020 -8.46079 -7.66822 -6.04716 -3.99063 3.28087 3.36923 3.37466 4.43139 4.70783 5.18488 5.55238 5.64225 5.76504 5.81681 5.85765 6.00065 6.01996 6.13077 6.16850 6.20300 6.23439 6.32506 6.42493 6.59682 6.66003 6.76811 6.87497 7.00446 7.16288 7.18723 7.29912 7.60269 7.74396 7.85794 7.90342 8.60279 9.02070 9.58753 11.08279 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.037760 B = 0.015077 C = 0.013683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.353460 B = 1856.669049 C = 2045.853073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.071 4.071 3 C 0.094 3.906 4 C -0.167 4.167 5 C 0.010 3.990 6 H 0.038 0.962 7 C -0.490 4.490 8 H 0.079 0.921 9 C 0.070 3.930 10 N -0.899 5.899 11 Si 0.871 3.129 12 H -0.277 1.277 13 H -0.291 1.291 14 H -0.269 1.269 15 C -0.116 4.116 16 C 0.032 3.968 17 N -0.508 5.508 18 C 0.006 3.994 19 H 0.039 0.961 20 H 0.037 0.963 21 H 0.057 0.943 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.262 0.738 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.023 0.977 33 H 0.053 0.947 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 8.024 -0.187 10.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.108 4.108 3 C 0.004 3.996 4 C -0.226 4.226 5 C -0.009 4.009 6 H 0.057 0.943 7 C -0.528 4.528 8 H 0.097 0.903 9 C -0.131 4.131 10 N -0.537 5.537 11 Si 0.700 3.300 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.195 1.195 15 C -0.154 4.154 16 C -0.096 4.096 17 N -0.232 5.232 18 C -0.142 4.142 19 H 0.058 0.942 20 H 0.056 0.944 21 H 0.076 0.924 22 H 0.094 0.906 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.063 7.507 -0.509 10.320 hybrid contribution 0.577 1.188 1.574 2.054 sum -6.486 8.695 1.065 10.900 Atomic orbital electron populations 1.22082 0.99018 0.99943 1.00445 1.21215 0.91536 0.94751 1.03345 1.22165 0.97141 0.93760 0.86495 1.22484 1.00614 0.99731 0.99751 1.20195 0.90272 0.96935 0.93529 0.94344 1.20901 1.28344 0.96148 1.07360 0.90333 1.25066 0.96139 0.94596 0.97304 1.69901 1.36838 1.11796 1.35187 0.86946 0.78687 0.81260 0.83119 1.20289 1.21739 1.19464 1.22714 0.94181 0.97453 1.01085 1.23200 0.93258 0.94131 0.98977 1.64777 1.03685 1.22595 1.32111 1.22717 0.94781 0.97738 0.98994 0.94200 0.94393 0.92387 0.90551 0.91970 0.92537 0.93979 0.92909 0.92771 0.91047 0.93158 0.91616 0.95281 0.95844 0.92862 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 8.27 37.15 0.31 -2.44 16 2 C -0.07 -1.50 4.03 -26.73 -0.11 -1.61 16 3 C 0.09 1.92 0.72 -130.54 -0.09 1.83 16 4 C -0.17 -3.11 6.75 37.16 0.25 -2.86 16 5 C 0.01 0.24 2.55 -90.19 -0.23 0.01 16 6 H 0.04 0.92 4.32 -51.93 -0.22 0.69 16 7 C -0.49 -13.19 6.54 -34.44 -0.23 -13.41 16 8 H 0.08 2.32 7.23 -52.49 -0.38 1.94 16 9 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 10 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 11 Si 0.87 21.40 27.07 -169.99 -4.60 16.80 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 14 H -0.27 -6.42 6.65 56.52 0.38 -6.05 16 15 C -0.12 -2.39 6.61 -24.64 -0.16 -2.55 16 16 C 0.03 0.58 6.55 -1.89 -0.01 0.56 16 17 N -0.51 -9.47 4.74 -223.17 -1.06 -10.53 16 18 C 0.01 0.10 7.77 60.06 0.47 0.57 16 19 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.04 0.61 6.35 -51.93 -0.33 0.28 16 21 H 0.06 0.98 6.08 -51.92 -0.32 0.66 16 22 H 0.08 1.80 6.63 -51.93 -0.34 1.46 16 23 H 0.06 1.44 7.87 -51.93 -0.41 1.03 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.04 0.74 7.61 -51.93 -0.40 0.35 16 26 H 0.05 0.87 5.13 -51.92 -0.27 0.60 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.07 1.53 7.87 -51.93 -0.41 1.13 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.03 0.49 7.96 -51.93 -0.41 0.08 16 32 H 0.02 0.35 6.28 -51.93 -0.33 0.03 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.08 4.80 -51.93 -0.25 0.83 16 LS Contribution 249.04 15.07 3.75 3.75 Total: -1.00 -28.21 249.04 -6.37 -34.58 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.34 Total: -0.50 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 0.10 Total: -18.03 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.28 Total: -36.61 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.60 Total: 16.80 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.21 -6.37 -34.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152635.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.883 kcal (2) G-P(sol) polarization free energy of solvation -28.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds