Wall clock time and date at job start Mon Mar 30 2020 20:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46969 * 2 1 4 4 C 1.52999 * 110.06619 * 300.24421 * 3 2 1 5 5 C 1.53998 * 109.91762 * 179.04090 * 3 2 1 6 6 H 1.09001 * 110.30872 * 358.33625 * 5 3 2 7 7 C 1.50703 * 110.30677 * 120.50577 * 5 3 2 8 8 H 1.07994 * 119.99788 * 357.17169 * 7 5 3 9 9 C 1.37877 * 119.99532 * 177.17069 * 7 5 3 10 10 N 1.31513 * 120.00385 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 119.99678 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47427 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46809 * 120.00296 * 11 9 7 14 14 H 1.48496 * 109.47470 * 239.99975 * 11 9 7 15 15 C 1.54595 * 105.14134 * 239.42302 * 5 3 2 16 16 C 1.54938 * 102.92210 * 338.04256 * 15 5 3 17 17 N 1.47902 * 109.91609 * 61.45309 * 3 2 1 18 18 C 1.46901 * 110.99844 * 265.19345 * 17 3 2 19 19 H 1.09008 * 109.47084 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47505 * 300.00006 * 1 2 3 21 21 H 1.09004 * 109.47125 * 60.00524 * 1 2 3 22 22 H 1.09001 * 109.47505 * 239.99994 * 2 1 3 23 23 H 1.09004 * 109.47259 * 120.00014 * 2 1 3 24 24 H 1.09006 * 109.46905 * 179.74953 * 4 3 2 25 25 H 1.08999 * 109.47549 * 299.75387 * 4 3 2 26 26 H 1.09002 * 109.47020 * 59.75810 * 4 3 2 27 27 H 0.97004 * 120.00469 * 179.97438 * 10 9 7 28 28 H 1.08994 * 110.72570 * 219.68588 * 15 5 3 29 29 H 1.08999 * 110.87507 * 96.47123 * 15 5 3 30 30 H 1.09005 * 110.66647 * 278.98508 * 16 15 5 31 31 H 1.08998 * 110.66670 * 155.84758 * 16 15 5 32 32 H 1.09002 * 109.47401 * 302.47923 * 18 17 3 33 33 H 1.09001 * 109.46874 * 182.47936 * 18 17 3 34 34 H 1.09004 * 109.46970 * 62.48069 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5324 2.1787 -1.2415 5 6 3.5796 1.4546 0.0242 6 1 3.9654 0.4360 0.0657 7 6 4.1162 2.1694 -1.1892 8 1 3.4363 2.5417 -1.9411 9 6 5.4751 2.3479 -1.3392 10 7 6.3031 1.8941 -0.4237 11 14 6.1403 3.2332 -2.8436 12 1 5.0111 3.6421 -3.7170 13 1 6.8956 4.4380 -2.4152 14 1 7.0431 2.3240 -3.5942 15 6 3.9572 2.2240 1.3109 16 6 2.6844 3.0582 1.6018 17 7 1.5813 2.1390 1.2215 18 6 0.3399 2.8827 0.9688 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.8974 3.2058 -1.2294 25 1 1.8958 1.6744 -2.1369 26 1 0.4424 2.1806 -1.2425 27 1 7.2591 2.0194 -0.5294 28 1 4.8130 2.8753 1.1337 29 1 4.1620 1.5345 2.1298 30 1 2.6650 3.9577 0.9864 31 1 2.6251 3.3132 2.6599 32 1 0.5006 3.5931 0.1579 33 1 0.0487 3.4208 1.8709 34 1 -0.4507 2.1859 0.6901 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261152636.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:47 Heat of formation + Delta-G solvation = -10.733530 kcal Electronic energy + Delta-G solvation = -13739.622806 eV Core-core repulsion = 11671.807969 eV Total energy + Delta-G solvation = -2067.814836 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.80176 -35.23160 -34.28021 -32.40296 -30.52707 -27.43295 -26.82596 -25.37779 -23.23897 -21.64681 -19.41519 -17.97512 -16.90715 -16.62674 -15.91409 -15.60082 -14.98449 -14.49261 -14.10404 -13.74722 -13.29879 -13.13964 -12.97515 -12.87478 -12.65104 -12.57634 -12.22451 -12.02929 -11.75555 -11.71240 -11.37899 -11.16533 -10.70797 -10.61243 -10.40688 -9.11246 -8.07902 -6.17186 1.38183 1.40988 1.50774 2.43613 3.22361 3.32409 4.08690 4.16273 4.38956 4.43105 4.48988 4.61844 4.66374 4.77707 4.81119 4.86164 4.88472 5.02037 5.09129 5.18132 5.27442 5.31862 5.37425 5.44204 5.53554 5.66695 5.70853 5.90650 5.94498 6.14586 6.43762 6.51331 6.94095 7.50557 9.00209 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.043175 B = 0.012656 C = 0.011931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.363854 B = 2211.775509 C = 2346.327403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C 0.096 3.904 4 C -0.137 4.137 5 C 0.043 3.957 6 H -0.007 1.007 7 C -0.524 4.524 8 H 0.075 0.925 9 C 0.009 3.991 10 N -0.921 5.921 11 Si 0.946 3.054 12 H -0.265 1.265 13 H -0.284 1.284 14 H -0.284 1.284 15 C -0.099 4.099 16 C 0.048 3.952 17 N -0.517 5.517 18 C 0.005 3.995 19 H 0.059 0.941 20 H 0.066 0.934 21 H 0.057 0.943 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.257 0.743 28 H 0.049 0.951 29 H 0.028 0.972 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.588 0.904 0.786 10.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C 0.006 3.994 4 C -0.195 4.195 5 C 0.024 3.976 6 H 0.011 0.989 7 C -0.562 4.562 8 H 0.093 0.907 9 C -0.189 4.189 10 N -0.561 5.561 11 Si 0.773 3.227 12 H -0.189 1.189 13 H -0.211 1.211 14 H -0.210 1.210 15 C -0.138 4.138 16 C -0.080 4.080 17 N -0.241 5.241 18 C -0.143 4.143 19 H 0.078 0.922 20 H 0.085 0.915 21 H 0.076 0.924 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.542 0.526 1.241 10.628 hybrid contribution 1.321 0.939 -1.289 2.071 sum -9.221 1.466 -0.048 9.337 Atomic orbital electron populations 1.21878 0.94321 1.01735 1.02069 1.21380 0.97065 0.94720 1.00224 1.21785 0.95043 0.94178 0.88358 1.22223 0.99377 0.99642 0.98220 1.19496 0.90258 0.94289 0.93561 0.98852 1.21987 0.91964 1.35937 1.06360 0.90712 1.25757 0.97753 0.96707 0.98640 1.70134 1.02740 1.47617 1.35628 0.85676 0.78455 0.78264 0.80312 1.18887 1.21066 1.21047 1.22222 0.96243 0.98219 0.97081 1.23063 0.91283 0.94116 0.99505 1.64810 1.03296 1.25273 1.30702 1.22804 0.92949 0.97989 1.00567 0.92227 0.91524 0.92448 0.93265 0.93410 0.94191 0.93279 0.91685 0.93403 0.93227 0.95320 0.95194 0.90238 0.95494 0.91102 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 8.39 71.98 0.60 -3.35 16 2 C -0.10 -3.47 4.98 30.59 0.15 -3.32 16 3 C 0.10 3.88 0.72 3.67 0.00 3.88 16 4 C -0.14 -5.18 5.31 71.98 0.38 -4.79 16 5 C 0.04 2.18 2.56 -10.66 -0.03 2.16 16 6 H -0.01 -0.38 7.69 -2.39 -0.02 -0.40 16 7 C -0.52 -28.32 7.66 25.60 0.20 -28.12 16 8 H 0.07 3.89 4.71 -2.91 -0.01 3.88 16 9 C 0.01 0.53 5.08 84.65 0.43 0.96 16 10 N -0.92 -54.19 11.91 21.45 0.26 -53.93 16 11 Si 0.95 43.83 29.54 68.60 2.03 45.85 16 12 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 14 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 15 C -0.10 -4.86 6.12 31.80 0.19 -4.66 16 16 C 0.05 1.94 6.55 86.65 0.57 2.51 16 17 N -0.52 -19.22 4.90 -859.89 -4.21 -23.43 16 18 C 0.01 0.15 7.88 127.69 1.01 1.15 16 19 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 20 H 0.07 1.79 5.81 -2.39 -0.01 1.78 16 21 H 0.06 1.48 6.47 -2.38 -0.02 1.47 16 22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.04 1.63 6.63 -2.38 -0.02 1.61 16 25 H 0.05 1.96 7.09 -2.39 -0.02 1.94 16 26 H 0.06 2.03 5.01 -2.39 -0.01 2.02 16 27 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.05 2.72 6.52 -2.39 -0.02 2.70 16 29 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.03 1.24 8.00 -2.38 -0.02 1.22 16 31 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.03 0.81 6.16 -2.39 -0.01 0.80 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.09 2.23 4.96 -2.38 -0.01 2.22 16 Total: -1.00 -59.55 249.11 2.64 -56.90 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.07 Total: 8.20 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 3.51 Total: -33.60 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -3.96 Total: -77.36 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -59.55 2.64 -56.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152636.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.167 kcal (2) G-P(sol) polarization free energy of solvation -59.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds