Wall clock time and date at job start Mon Mar 30 2020 20:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47032 * 2 1 4 4 C 1.53000 * 109.47344 * 119.99925 * 2 1 3 5 5 C 1.52999 * 109.47387 * 175.00094 * 4 2 1 6 6 H 1.08998 * 110.45823 * 55.96008 * 5 4 2 7 7 N 1.48568 * 110.40967 * 293.54877 * 5 4 2 8 8 C 1.48558 * 104.22068 * 201.73787 * 7 5 4 9 9 C 1.54388 * 104.59594 * 39.48270 * 8 7 5 10 10 C 1.54268 * 105.05642 * 336.14807 * 9 8 7 11 11 H 1.09003 * 110.32138 * 118.89762 * 10 9 8 12 12 C 1.50704 * 110.31855 * 241.09916 * 10 9 8 13 13 H 1.08008 * 119.99306 * 118.55102 * 12 10 9 14 14 C 1.37876 * 120.00479 * 298.54762 * 12 10 9 15 15 N 1.31515 * 119.99519 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99975 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47006 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47221 * 120.00142 * 16 14 12 19 19 H 1.48494 * 109.47138 * 240.00204 * 16 14 12 20 20 H 1.08994 * 109.47069 * 299.99749 * 1 2 3 21 21 H 1.08999 * 109.46752 * 59.99918 * 1 2 3 22 22 H 1.08994 * 109.47260 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47534 * 240.00211 * 2 1 3 24 24 H 1.09000 * 109.47091 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47419 * 299.99674 * 3 2 1 26 26 H 1.09002 * 109.47331 * 60.00268 * 3 2 1 27 27 H 1.09001 * 109.46708 * 55.00214 * 4 2 1 28 28 H 1.08996 * 109.47380 * 295.00390 * 4 2 1 29 29 H 1.00901 * 110.99841 * 82.18385 * 7 5 4 30 30 H 1.08999 * 110.41183 * 158.25969 * 8 7 5 31 31 H 1.09004 * 110.41079 * 280.70783 * 8 7 5 32 32 H 1.09001 * 110.32370 * 95.04105 * 9 8 7 33 33 H 1.08993 * 110.32428 * 217.25341 * 9 8 7 34 34 H 0.97005 * 119.99171 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1880 6 1 4.0134 0.1554 1.0698 7 7 3.9757 -1.7239 0.0739 8 6 5.3445 -2.1655 0.4459 9 6 5.2773 -2.3980 1.9707 10 6 4.1065 -1.5201 2.4588 11 1 3.3327 -2.1392 2.9128 12 6 4.5992 -0.4906 3.4429 13 1 4.4960 0.5614 3.2209 14 6 5.1815 -0.8916 4.6266 15 7 5.3075 -2.1725 4.8966 16 14 5.7916 0.3846 5.8467 17 1 5.5338 1.7451 5.3103 18 1 5.0756 0.2179 7.1369 19 1 7.2497 0.2053 6.0630 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6054 -1.7198 1.2951 28 1 1.7517 -0.1584 2.1370 29 1 3.9822 -1.2269 -0.8042 30 1 5.5981 -3.0921 -0.0691 31 1 6.0716 -1.3879 0.2117 32 1 5.0782 -3.4480 2.1851 33 1 6.2082 -2.0843 2.4429 34 1 5.7175 -2.4546 5.7292 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261168806.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:51 Heat of formation + Delta-G solvation = -27.607702 kcal Electronic energy + Delta-G solvation = -13133.928627 eV Core-core repulsion = 11065.382071 eV Total energy + Delta-G solvation = -2068.546555 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.09274 -35.23075 -32.66106 -29.33963 -28.90527 -26.85223 -25.41368 -23.38792 -20.60724 -19.12741 -18.78403 -16.56558 -15.16585 -14.84857 -14.39769 -13.99785 -13.59145 -13.03006 -12.63329 -12.21569 -11.93736 -11.51969 -11.25437 -11.14318 -10.95842 -10.72196 -10.62607 -10.52677 -10.27613 -10.14361 -9.94359 -9.62670 -8.95651 -8.68221 -8.35795 -7.75672 -5.99122 -4.02465 3.29602 3.37906 3.41387 4.44464 5.13042 5.26502 5.33546 5.34955 5.42479 5.88162 5.95427 6.02026 6.08291 6.11676 6.13284 6.27157 6.33804 6.43313 6.46839 6.49413 6.64405 6.88082 6.90516 7.02900 7.24246 7.29111 7.60415 7.73934 7.90783 8.03584 8.16842 8.51529 9.00927 9.61356 11.10129 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.034549 B = 0.011083 C = 0.009372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.250780 B = 2525.711065 C = 2986.869416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.092 4.092 5 C 0.069 3.931 6 H 0.041 0.959 7 N -0.667 5.667 8 C 0.033 3.967 9 C -0.093 4.093 10 C 0.053 3.947 11 H 0.032 0.968 12 C -0.512 4.512 13 H 0.054 0.946 14 C 0.061 3.939 15 N -0.887 5.887 16 Si 0.887 3.113 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.285 1.285 20 H 0.051 0.949 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.314 0.686 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 3.444 -8.136 9.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.130 4.130 5 C -0.040 4.040 6 H 0.059 0.941 7 N -0.295 5.295 8 C -0.097 4.097 9 C -0.131 4.131 10 C 0.034 3.966 11 H 0.050 0.950 12 C -0.551 4.551 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.525 5.525 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 H 0.070 0.930 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.127 0.873 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.714 2.704 -7.785 9.494 hybrid contribution 1.021 1.451 0.592 1.870 sum -3.693 4.154 -7.193 9.091 Atomic orbital electron populations 1.21821 0.96125 1.01287 1.00889 1.21144 0.94890 0.95925 0.99674 1.21881 1.01283 0.96434 1.00798 1.21519 0.95394 0.99865 0.96199 1.22728 0.94169 0.94400 0.92744 0.94061 1.63722 1.22646 1.38923 1.04171 1.22972 0.89354 0.98096 0.99237 1.22192 1.01509 0.99333 0.90108 1.19386 0.93332 0.93781 0.90054 0.94993 1.21245 1.38959 0.92552 1.02326 0.92766 1.24969 0.96042 0.95095 0.97918 1.70007 1.44202 1.13912 1.24427 0.86613 0.78465 0.81987 0.81413 1.19842 1.21046 1.21116 0.92995 0.93577 0.92927 0.91456 0.92614 0.93745 0.92848 0.92040 0.91837 0.87286 0.92329 0.95704 0.93831 0.91718 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.19 37.16 0.34 -1.54 16 2 C -0.10 -1.47 2.86 -90.62 -0.26 -1.73 16 3 C -0.15 -2.10 8.96 37.16 0.33 -1.77 16 4 C -0.09 -1.70 4.29 -26.73 -0.11 -1.82 16 5 C 0.07 1.43 2.49 -66.07 -0.16 1.27 16 6 H 0.04 0.89 6.02 -51.93 -0.31 0.58 16 7 N -0.67 -12.81 6.96 -102.74 -0.71 -13.52 16 8 C 0.03 0.66 7.47 -2.18 -0.02 0.64 16 9 C -0.09 -2.25 5.75 -25.34 -0.15 -2.39 16 10 C 0.05 1.35 2.54 -90.39 -0.23 1.12 16 11 H 0.03 0.89 7.86 -51.93 -0.41 0.48 16 12 C -0.51 -14.06 8.37 -34.44 -0.29 -14.35 16 13 H 0.05 1.48 7.58 -52.48 -0.40 1.08 16 14 C 0.06 1.71 5.09 -17.82 -0.09 1.62 16 15 N -0.89 -25.69 12.35 55.43 0.68 -25.00 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 1.01 7.28 -51.93 -0.38 0.63 16 24 H 0.05 0.85 6.50 -51.93 -0.34 0.51 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.31 5.25 8.32 -39.29 -0.33 4.92 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.70 7.23 -51.93 -0.38 1.32 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 267.71 15.07 4.03 4.03 Total: -1.00 -28.14 267.71 -7.55 -35.69 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.90 Total: 1.40 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -0.63 Total: -18.94 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: -0.03 Total: -38.52 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.14 -7.55 -35.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168806.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.079 kcal (2) G-P(sol) polarization free energy of solvation -28.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds