Wall clock time and date at job start Mon Mar 30 2020 20:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47032 * 2 1 4 4 C 1.53000 * 109.47344 * 119.99925 * 2 1 3 5 5 C 1.52999 * 109.47387 * 175.00094 * 4 2 1 6 6 H 1.08998 * 110.45823 * 55.96008 * 5 4 2 7 7 N 1.48568 * 110.40967 * 293.54877 * 5 4 2 8 8 C 1.48558 * 104.22068 * 201.73787 * 7 5 4 9 9 C 1.54388 * 104.59594 * 39.48270 * 8 7 5 10 10 C 1.54268 * 105.05642 * 336.14807 * 9 8 7 11 11 H 1.09003 * 110.32138 * 118.89762 * 10 9 8 12 12 C 1.50704 * 110.31855 * 241.09916 * 10 9 8 13 13 H 1.08008 * 119.99306 * 118.55102 * 12 10 9 14 14 C 1.37876 * 120.00479 * 298.54762 * 12 10 9 15 15 N 1.31515 * 119.99519 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99975 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47006 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47221 * 120.00142 * 16 14 12 19 19 H 1.48494 * 109.47138 * 240.00204 * 16 14 12 20 20 H 1.08994 * 109.47069 * 299.99749 * 1 2 3 21 21 H 1.08999 * 109.46752 * 59.99918 * 1 2 3 22 22 H 1.08994 * 109.47260 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47534 * 240.00211 * 2 1 3 24 24 H 1.09000 * 109.47091 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47419 * 299.99674 * 3 2 1 26 26 H 1.09002 * 109.47331 * 60.00268 * 3 2 1 27 27 H 1.09001 * 109.46708 * 55.00214 * 4 2 1 28 28 H 1.08996 * 109.47380 * 295.00390 * 4 2 1 29 29 H 1.00901 * 110.99841 * 82.18385 * 7 5 4 30 30 H 1.08999 * 110.41183 * 158.25969 * 8 7 5 31 31 H 1.09004 * 110.41079 * 280.70783 * 8 7 5 32 32 H 1.09001 * 110.32370 * 95.04105 * 9 8 7 33 33 H 1.08993 * 110.32428 * 217.25341 * 9 8 7 34 34 H 0.97005 * 119.99171 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1880 6 1 4.0134 0.1554 1.0698 7 7 3.9757 -1.7239 0.0739 8 6 5.3445 -2.1655 0.4459 9 6 5.2773 -2.3980 1.9707 10 6 4.1065 -1.5201 2.4588 11 1 3.3327 -2.1392 2.9128 12 6 4.5992 -0.4906 3.4429 13 1 4.4960 0.5614 3.2209 14 6 5.1815 -0.8916 4.6266 15 7 5.3075 -2.1725 4.8966 16 14 5.7916 0.3846 5.8467 17 1 5.5338 1.7451 5.3103 18 1 5.0756 0.2179 7.1369 19 1 7.2497 0.2053 6.0630 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6054 -1.7198 1.2951 28 1 1.7517 -0.1584 2.1370 29 1 3.9822 -1.2269 -0.8042 30 1 5.5981 -3.0921 -0.0691 31 1 6.0716 -1.3879 0.2117 32 1 5.0782 -3.4480 2.1851 33 1 6.2082 -2.0843 2.4429 34 1 5.7175 -2.4546 5.7292 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261168806.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:51 Heat of formation + Delta-G solvation = -45.126853 kcal Electronic energy + Delta-G solvation = -13134.688314 eV Core-core repulsion = 11065.382071 eV Total energy + Delta-G solvation = -2069.306243 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.77328 -36.61805 -34.71557 -31.08937 -30.66808 -27.95173 -27.26195 -25.18711 -22.19357 -20.90046 -20.32198 -18.56383 -16.98794 -16.40786 -16.25399 -15.59735 -14.87888 -14.53860 -14.19976 -13.94686 -13.37089 -13.03797 -12.98279 -12.61790 -12.58724 -12.48122 -12.39551 -12.23675 -11.91015 -11.68820 -11.41803 -11.32841 -10.76254 -10.70283 -10.49150 -9.35923 -8.13597 -6.24058 1.37960 1.39783 1.51038 2.41310 3.17165 3.54746 3.96382 4.14528 4.19251 4.30321 4.45557 4.52572 4.66912 4.76503 4.85527 4.87225 4.98302 5.02368 5.12845 5.15815 5.23987 5.25303 5.44179 5.47057 5.55605 5.62672 5.63968 5.72942 5.91322 5.99786 6.43630 6.67861 6.87684 7.43656 8.95640 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.034549 B = 0.011083 C = 0.009372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.250780 B = 2525.711065 C = 2986.869416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.087 4.087 5 C 0.080 3.920 6 H 0.038 0.962 7 N -0.661 5.661 8 C 0.043 3.957 9 C -0.090 4.090 10 C 0.044 3.956 11 H -0.007 1.007 12 C -0.526 4.526 13 H 0.052 0.948 14 C 0.011 3.989 15 N -0.919 5.919 16 Si 0.953 3.047 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.280 1.280 20 H 0.049 0.951 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.043 0.957 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.336 0.664 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.025 0.975 33 H 0.037 0.963 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.703 4.695 -9.575 11.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.125 4.125 5 C -0.029 4.029 6 H 0.056 0.944 7 N -0.291 5.291 8 C -0.087 4.087 9 C -0.128 4.128 10 C 0.025 3.975 11 H 0.011 0.989 12 C -0.565 4.565 13 H 0.070 0.930 14 C -0.188 4.188 15 N -0.558 5.558 16 Si 0.778 3.222 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.206 1.206 20 H 0.068 0.932 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.093 0.907 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.151 0.849 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.021 3.965 -9.247 11.244 hybrid contribution 1.107 1.023 1.052 1.838 sum -3.914 4.988 -8.195 10.361 Atomic orbital electron populations 1.21790 0.94396 1.01698 1.01949 1.21083 0.96332 0.95945 0.97586 1.21861 1.00495 0.96006 1.01825 1.21440 0.93748 0.99590 0.97719 1.22495 0.95559 0.93712 0.91181 0.94439 1.63664 1.22040 1.38782 1.04572 1.22873 0.90106 0.99717 0.95971 1.22020 0.99640 0.97808 0.93373 1.19375 0.92818 0.93503 0.91830 0.98851 1.21539 1.38900 0.92840 1.03179 0.92963 1.25764 0.96258 0.96982 0.99793 1.70133 1.44969 1.15751 1.24968 0.85584 0.77919 0.79727 0.78935 1.18979 1.20693 1.20612 0.93180 0.91283 0.92914 0.90731 0.93791 0.91137 0.93430 0.93190 0.93494 0.84898 0.89930 0.94545 0.95639 0.94436 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.19 71.98 0.66 -2.67 16 2 C -0.09 -2.54 2.86 -10.79 -0.03 -2.57 16 3 C -0.14 -3.79 8.96 71.98 0.65 -3.14 16 4 C -0.09 -3.20 4.29 30.59 0.13 -3.06 16 5 C 0.08 3.31 2.49 45.06 0.11 3.42 16 6 H 0.04 1.60 6.02 -2.39 -0.01 1.58 16 7 N -0.66 -24.22 6.96 -478.97 -3.33 -27.56 16 8 C 0.04 1.65 7.47 86.45 0.65 2.29 16 9 C -0.09 -4.43 5.75 31.50 0.18 -4.25 16 10 C 0.04 2.28 2.54 -10.64 -0.03 2.25 16 11 H -0.01 -0.40 7.86 -2.39 -0.02 -0.41 16 12 C -0.53 -29.45 8.37 25.60 0.21 -29.23 16 13 H 0.05 2.87 7.58 -2.91 -0.02 2.85 16 14 C 0.01 0.61 5.09 84.65 0.43 1.04 16 15 N -0.92 -54.64 12.35 21.45 0.26 -54.37 16 16 Si 0.95 44.20 29.54 68.60 2.03 46.23 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.07 1.99 7.28 -2.39 -0.02 1.98 16 24 H 0.04 1.24 6.50 -2.39 -0.02 1.23 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.34 10.18 8.32 -89.69 -0.75 9.44 16 30 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.04 2.02 7.23 -2.39 -0.02 2.00 16 34 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 Total: -1.00 -61.04 267.71 2.23 -58.81 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.30 Total: 12.81 kcal Atomic # 6 Polarization: -38.89 SS G_CDS: 2.96 Total: -35.92 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -3.07 Total: -81.93 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -61.04 2.23 -58.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168806.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.685 kcal (2) G-P(sol) polarization free energy of solvation -61.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds