Wall clock time and date at job start Mon Mar 30 2020 20:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00333 * 2 1 4 4 H 1.48497 * 109.47072 * 270.00333 * 3 2 1 5 5 H 1.48497 * 109.46673 * 29.99611 * 3 2 1 6 6 H 1.48493 * 109.47200 * 149.99605 * 3 2 1 7 7 C 1.37880 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99528 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00377 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47039 * 180.02562 * 9 7 2 11 11 H 1.08999 * 108.85280 * 306.43966 * 10 9 7 12 12 C 1.54069 * 108.87770 * 64.99938 * 10 9 7 13 13 C 1.54067 * 112.81340 * 162.49246 * 12 10 9 14 14 C 1.50474 * 112.49397 * 41.71952 * 13 12 10 15 15 C 1.54238 * 108.52066 * 265.83985 * 14 13 12 16 16 C 1.45542 * 112.40586 * 79.99689 * 15 14 13 17 17 C 1.50329 * 108.92980 * 187.93256 * 10 9 7 18 18 H 1.08999 * 109.69325 * 264.78932 * 17 10 9 19 19 N 1.46900 * 109.48907 * 25.31985 * 17 10 9 20 20 H 0.96997 * 119.99792 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46847 * 60.00205 * 9 7 2 22 22 H 1.08991 * 109.47022 * 299.99700 * 9 7 2 23 23 H 1.08997 * 108.81151 * 41.63460 * 12 10 9 24 24 H 1.08996 * 108.72480 * 283.29430 * 12 10 9 25 25 H 1.09000 * 108.87986 * 280.93661 * 13 12 10 26 26 H 1.08999 * 108.79619 * 162.43950 * 13 12 10 27 27 H 1.09009 * 109.62320 * 146.13636 * 14 13 12 28 28 H 1.08996 * 109.63092 * 25.55345 * 14 13 12 29 29 H 1.09006 * 108.89546 * 319.24604 * 15 14 13 30 30 H 1.09001 * 108.89925 * 200.75187 * 15 14 13 31 31 H 1.09002 * 108.89596 * 58.81954 * 16 15 14 32 32 H 1.09003 * 108.89788 * 177.40988 * 16 15 14 33 33 H 1.00896 * 111.00080 * 179.04340 * 19 17 10 34 34 H 1.00896 * 110.99775 * 302.99451 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0010 11 1 3.5609 -3.1731 0.8305 12 6 3.6073 -3.3116 -1.3205 13 6 4.4134 -4.5909 -1.6162 14 6 4.6152 -5.4403 -0.3907 15 6 5.9738 -5.0740 0.2410 16 6 5.9049 -3.8587 1.0389 17 6 5.5118 -2.6270 0.1978 18 1 6.0105 -2.6705 -0.7704 19 7 5.9049 -1.4008 0.9049 20 1 -0.4850 0.8400 -0.0004 21 1 3.8744 -0.6801 0.8911 22 1 3.8751 -0.6805 -0.8888 23 1 3.7561 -2.6057 -2.1376 24 1 2.5492 -3.5675 -1.2661 25 1 5.3881 -4.3093 -2.0147 26 1 3.8816 -5.1755 -2.3668 27 1 4.6139 -6.4937 -0.6711 28 1 3.8152 -5.2477 0.3241 29 1 6.7062 -4.9333 -0.5539 30 1 6.3002 -5.8962 0.8778 31 1 5.1670 -3.9966 1.8292 32 1 6.8792 -3.6792 1.4937 33 1 6.9011 -1.3782 1.0630 34 1 5.5998 -0.5804 0.4029 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261219505.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:53 Heat of formation + Delta-G solvation = -21.437365 kcal Electronic energy + Delta-G solvation = -13312.585563 eV Core-core repulsion = 11244.306574 eV Total energy + Delta-G solvation = -2068.278990 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.00913 -34.37425 -33.14742 -31.87906 -29.43154 -27.54688 -24.21084 -23.15708 -21.07643 -20.16071 -17.99400 -16.88829 -15.46901 -15.16850 -14.48507 -14.01563 -13.77443 -13.51549 -12.94846 -12.72867 -12.22019 -12.00496 -11.81769 -11.20367 -10.90391 -10.62607 -10.51947 -10.37232 -10.10674 -9.98667 -9.67670 -9.52880 -9.15138 -8.90890 -8.45515 -8.07460 -5.95284 -3.90895 3.35394 3.43360 3.47496 4.52900 4.83955 4.96519 5.17868 5.35732 5.39132 5.59197 5.62711 5.74588 5.81004 5.88048 5.99331 6.10348 6.34218 6.41629 6.45202 6.48416 6.56975 6.63095 6.68808 6.95640 7.00498 7.15593 7.44433 7.56104 7.73087 7.87477 8.00823 8.65253 9.11083 9.68310 11.18473 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.045556 B = 0.010997 C = 0.009545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.481709 B = 2545.516842 C = 2932.864143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.063 3.937 3 Si 0.878 3.122 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.509 4.509 8 H 0.070 0.930 9 C -0.016 4.016 10 C -0.067 4.067 11 H 0.065 0.935 12 C -0.102 4.102 13 C -0.120 4.120 14 C -0.118 4.118 15 C -0.112 4.112 16 C -0.110 4.110 17 C 0.100 3.900 18 H 0.027 0.973 19 N -0.845 5.845 20 H 0.260 0.740 21 H 0.041 0.959 22 H 0.001 0.999 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.323 0.677 34 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.330 -7.091 -1.115 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.137 4.137 3 Si 0.706 3.294 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.187 1.187 7 C -0.547 4.547 8 H 0.088 0.912 9 C -0.053 4.053 10 C -0.086 4.086 11 H 0.083 0.917 12 C -0.140 4.140 13 C -0.158 4.158 14 C -0.155 4.155 15 C -0.150 4.150 16 C -0.148 4.148 17 C -0.011 4.011 18 H 0.045 0.955 19 N -0.377 5.377 20 H 0.070 0.930 21 H 0.059 0.941 22 H 0.019 0.981 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.134 0.866 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.708 -7.231 -0.529 13.772 hybrid contribution 0.851 1.170 -0.923 1.716 sum 12.559 -6.061 -1.452 14.020 Atomic orbital electron populations 1.69919 1.06294 1.26616 1.51969 1.25038 0.94688 0.99079 0.94935 0.86801 0.80650 0.83839 0.78144 1.20724 1.21651 1.18698 1.21194 0.89674 0.94180 1.49687 0.91159 1.19755 0.96950 0.92195 0.96446 1.20789 0.91846 0.99033 0.96919 0.91697 1.21878 0.99903 0.94651 0.97540 1.21416 1.00072 0.97061 0.97232 1.21351 0.97539 0.98425 0.98224 1.20447 0.97556 0.97571 0.99426 1.20477 1.01280 0.94197 0.98841 1.21091 0.97357 0.89169 0.93521 0.95533 1.58997 1.18271 1.04873 1.55515 0.92979 0.94134 0.98103 0.92864 0.91557 0.93081 0.93080 0.92735 0.91132 0.92853 0.92793 0.91567 0.93025 0.86592 0.83521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.46 13.96 55.43 0.77 -27.69 16 2 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.51 -14.55 9.10 -34.44 -0.31 -14.87 16 8 H 0.07 2.16 7.38 -52.48 -0.39 1.78 16 9 C -0.02 -0.38 2.24 -27.88 -0.06 -0.44 16 10 C -0.07 -1.34 1.60 -91.39 -0.15 -1.48 16 11 H 0.06 1.39 6.61 -51.93 -0.34 1.05 16 12 C -0.10 -1.90 4.76 -25.62 -0.12 -2.02 16 13 C -0.12 -1.78 5.31 -27.44 -0.15 -1.93 16 14 C -0.12 -1.61 5.61 -27.35 -0.15 -1.77 16 15 C -0.11 -1.43 5.26 -29.60 -0.16 -1.59 16 16 C -0.11 -1.59 4.90 -29.60 -0.15 -1.74 16 17 C 0.10 1.66 2.80 -68.39 -0.19 1.47 16 18 H 0.03 0.43 6.97 -51.93 -0.36 0.07 16 19 N -0.84 -14.02 8.23 -5.25 -0.04 -14.06 16 20 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 21 H 0.04 0.99 5.43 -51.93 -0.28 0.71 16 22 H 0.00 0.02 7.33 -51.93 -0.38 -0.36 16 23 H 0.05 1.03 7.88 -51.93 -0.41 0.62 16 24 H 0.07 1.36 7.46 -51.93 -0.39 0.97 16 25 H 0.05 0.72 6.63 -51.93 -0.34 0.37 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.07 1.07 6.97 -51.93 -0.36 0.71 16 29 H 0.05 0.65 7.47 -51.93 -0.39 0.26 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.05 7.47 -51.93 -0.39 0.66 16 32 H 0.05 0.68 8.03 -51.93 -0.42 0.26 16 33 H 0.32 4.38 8.96 -39.29 -0.35 4.03 16 34 H 0.35 6.12 6.79 -39.29 -0.27 5.85 16 LS Contribution 251.58 15.07 3.79 3.79 Total: -1.00 -30.34 251.58 -7.19 -37.53 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.50 Total: 5.69 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -1.53 Total: -22.61 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.73 Total: -41.75 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.34 -7.19 -37.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261219505.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.090 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds