Wall clock time and date at job start Mon Mar 30 2020 20:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48502 * 109.46940 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47261 * 299.99143 * 3 2 1 6 6 H 1.48501 * 109.47346 * 59.99703 * 3 2 1 7 7 C 1.37877 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00227 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99715 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.61641 * 59.29990 * 9 7 2 11 11 C 1.54948 * 110.69121 * 182.37181 * 9 7 2 12 12 O 1.45336 * 101.56615 * 153.81681 * 11 9 7 13 13 C 1.43369 * 104.74189 * 324.30605 * 12 11 9 14 14 C 1.53915 * 109.93445 * 145.00604 * 13 12 11 15 15 C 1.54971 * 104.11647 * 96.16974 * 14 13 12 16 16 C 1.54919 * 102.79092 * 37.65258 * 15 14 13 17 17 C 1.53535 * 110.14121 * 262.60777 * 13 12 11 18 18 O 1.42975 * 109.26306 * 24.00125 * 13 12 11 19 19 H 0.96995 * 119.99893 * 0.02562 * 1 2 3 20 20 H 1.09005 * 110.96330 * 272.03007 * 11 9 7 21 21 H 1.09002 * 110.96491 * 35.78520 * 11 9 7 22 22 H 1.09002 * 110.50598 * 214.82144 * 14 13 12 23 23 H 1.08999 * 110.50547 * 337.50971 * 14 13 12 24 24 H 1.09005 * 110.74668 * 279.32575 * 15 14 13 25 25 H 1.08995 * 110.90994 * 156.05373 * 15 14 13 26 26 H 1.08997 * 110.48729 * 203.57486 * 16 15 14 27 27 H 1.08995 * 110.59829 * 80.98960 * 16 15 14 28 28 H 1.09003 * 110.05451 * 359.73186 * 17 13 12 29 29 H 1.08999 * 110.05736 * 121.17186 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6084 -2.5713 -0.8769 11 6 2.2315 -3.6974 0.0612 12 8 1.4048 -4.7192 0.6814 13 6 0.5887 -4.0076 1.6210 14 6 -0.8068 -4.6522 1.6979 15 6 -0.7184 -5.6000 2.9208 16 6 0.1511 -4.7936 3.9177 17 6 1.2008 -4.0962 3.0264 18 8 0.4789 -2.6422 1.2112 19 1 -0.4850 0.8400 -0.0004 20 1 2.5430 -3.9974 -0.9394 21 1 3.0954 -3.4634 0.6833 22 1 -1.5705 -3.8914 1.8592 23 1 -1.0163 -5.2185 0.7905 24 1 -0.2285 -6.5353 2.6499 25 1 -1.7074 -5.7906 3.3376 26 1 0.6375 -5.4626 4.6275 27 1 -0.4538 -4.0551 4.4438 28 1 2.1178 -4.6848 2.9983 29 1 1.4102 -3.0963 3.4066 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019726922.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:47 Heat of formation + Delta-G solvation = -124.126889 kcal Electronic energy + Delta-G solvation = -13266.720069 eV Core-core repulsion = 10960.436371 eV Total energy + Delta-G solvation = -2306.283698 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.31003 -37.33160 -35.72547 -34.52840 -30.99817 -29.75129 -27.60394 -26.46225 -23.13818 -21.72306 -21.07972 -18.87168 -17.70710 -17.26802 -16.74229 -16.33645 -15.67815 -14.92752 -14.74046 -14.08037 -13.86104 -13.64069 -13.43812 -12.89363 -12.77682 -12.48164 -12.32204 -12.15117 -12.01456 -11.98897 -11.48773 -11.26555 -10.85501 -10.68974 -10.01389 -8.23898 -6.47442 1.39982 1.41073 1.54227 2.36164 2.79233 3.05565 3.55035 3.67059 3.73787 4.12461 4.21730 4.30802 4.48992 4.53929 4.60580 4.74123 4.79954 4.81834 5.01308 5.04209 5.13804 5.19855 5.28934 5.41768 5.43977 5.62614 6.02541 6.54432 6.85674 7.29777 8.85276 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.054970 B = 0.010725 C = 0.010252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.249661 B = 2609.994247 C = 2730.503871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 0.972 3.028 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.559 4.559 8 H 0.074 0.926 9 C 0.176 3.824 10 H 0.007 0.993 11 C 0.031 3.969 12 O -0.396 6.396 13 C 0.225 3.775 14 C -0.130 4.130 15 C -0.109 4.109 16 C -0.113 4.113 17 C -0.144 4.144 18 O -0.390 6.390 19 H 0.265 0.735 20 H 0.111 0.889 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 -7.858 5.097 9.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.180 4.180 3 Si 0.795 3.205 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.206 1.206 7 C -0.596 4.596 8 H 0.092 0.908 9 C 0.121 3.879 10 H 0.025 0.975 11 C -0.045 4.045 12 O -0.317 6.317 13 C 0.148 3.852 14 C -0.168 4.168 15 C -0.146 4.146 16 C -0.150 4.150 17 C -0.182 4.182 18 O -0.311 6.311 19 H 0.074 0.926 20 H 0.129 0.871 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.035 -7.833 5.157 9.435 hybrid contribution 0.284 1.127 -0.357 1.215 sum 1.318 -6.706 4.799 8.351 Atomic orbital electron populations 1.70186 1.07967 1.27872 1.47960 1.26036 0.95678 1.03526 0.92746 0.85322 0.79182 0.78151 0.77841 1.18190 1.19893 1.20570 1.21421 0.93383 0.90741 1.54099 0.90762 1.21195 0.88086 0.94575 0.84073 0.97518 1.24510 0.94391 0.86668 0.98936 1.89071 1.53761 1.32284 1.56619 1.24122 0.91365 0.80164 0.89592 1.22652 0.94576 0.99116 1.00443 1.22432 1.01139 0.97365 0.93707 1.22297 0.96499 0.99017 0.97190 1.22718 1.00024 1.01233 0.94185 1.89144 1.73163 1.24698 1.44125 0.92610 0.87096 0.91257 0.91224 0.91247 0.90417 0.88989 0.88901 0.91402 0.90342 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.93 13.04 21.45 0.28 -54.65 15 2 C 0.02 1.29 5.43 84.65 0.46 1.75 15 3 Si 0.97 43.59 29.54 68.60 2.03 45.62 15 4 H -0.26 -10.94 7.11 99.48 0.71 -10.24 15 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 7 C -0.56 -31.70 8.82 25.60 0.23 -31.48 15 8 H 0.07 3.97 7.77 -2.91 -0.02 3.95 15 9 C 0.18 9.58 3.46 30.51 0.11 9.69 15 10 H 0.01 0.42 8.14 -2.39 -0.02 0.40 15 11 C 0.03 1.36 7.40 72.65 0.54 1.90 15 12 O -0.40 -17.26 10.90 -126.22 -1.38 -18.64 15 13 C 0.23 9.84 1.37 31.08 0.04 9.88 15 14 C -0.13 -4.83 6.30 31.58 0.20 -4.64 15 15 C -0.11 -2.98 6.91 31.92 0.22 -2.76 15 16 C -0.11 -3.15 6.84 31.71 0.22 -2.93 15 17 C -0.14 -5.28 6.43 31.24 0.20 -5.08 15 18 O -0.39 -21.44 10.16 -126.22 -1.28 -22.72 15 19 H 0.27 15.05 8.31 -92.71 -0.77 14.28 15 20 H 0.11 4.28 8.14 -2.38 -0.02 4.26 15 21 H 0.07 2.94 8.03 -2.39 -0.02 2.92 15 22 H 0.07 2.74 8.08 -2.39 -0.02 2.73 15 23 H 0.07 2.54 8.06 -2.39 -0.02 2.52 15 24 H 0.08 1.96 8.14 -2.38 -0.02 1.94 15 25 H 0.09 2.03 8.14 -2.39 -0.02 2.01 15 26 H 0.09 2.04 8.14 -2.39 -0.02 2.02 15 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 15 28 H 0.08 2.69 7.96 -2.39 -0.02 2.67 15 29 H 0.06 2.37 7.96 -2.39 -0.02 2.35 15 Total: -1.00 -66.18 242.93 2.97 -63.20 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 1.12 Total: 10.84 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 2.21 Total: -23.66 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.28 Total: -54.65 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -2.66 Total: -41.36 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -66.18 2.97 -63.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019726922.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.922 kcal (2) G-P(sol) polarization free energy of solvation -66.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds