Wall clock time and date at job start Mon Mar 30 2020 20:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.97551 * 2 1 4 4 C 1.50696 * 109.46997 * 58.72097 * 3 2 1 5 5 H 1.07999 * 120.00319 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99717 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.51450 * 110.01256 * 121.28748 * 2 1 3 13 13 O 1.20758 * 126.34534 * 299.70047 * 12 2 1 14 14 C 1.51852 * 107.31526 * 119.72599 * 12 2 1 15 15 C 1.54886 * 104.43160 * 336.20665 * 14 12 2 16 16 C 1.54280 * 109.98462 * 238.72126 * 2 1 3 17 17 H 1.08994 * 110.56882 * 22.30820 * 16 2 1 18 18 O 1.42900 * 110.56613 * 145.02675 * 16 2 1 19 19 H 1.09004 * 109.46454 * 60.70539 * 1 2 3 20 20 H 1.08995 * 109.47409 * 180.70404 * 1 2 3 21 21 H 1.08994 * 109.47303 * 300.70985 * 1 2 3 22 22 H 1.09005 * 109.46767 * 298.72448 * 3 2 1 23 23 H 1.09002 * 109.47113 * 178.72788 * 3 2 1 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.09002 * 110.43634 * 217.47054 * 14 12 2 26 26 H 1.08998 * 110.54954 * 95.00026 * 14 12 2 27 27 H 1.09004 * 110.83439 * 279.41491 * 15 14 12 28 28 H 1.09000 * 110.83258 * 155.83808 * 15 14 12 29 29 H 0.96697 * 114.00027 * 180.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0527 1.4380 0.0000 4 6 1.5310 2.1620 1.2143 5 1 0.8910 1.6480 1.9161 6 6 1.8707 3.4810 1.4293 7 7 1.4159 4.1128 2.4893 8 14 2.9771 4.3703 0.2150 9 1 4.3955 4.1978 0.6195 10 1 2.7773 3.8042 -1.1432 11 1 2.6379 5.8160 0.2035 12 6 2.0483 -0.7390 1.2161 13 8 1.8404 -0.4519 2.3705 14 6 2.8784 -1.9077 0.7150 15 6 2.3376 -2.1823 -0.7102 16 6 2.0573 -0.7528 -1.2392 17 1 1.3009 -0.7761 -2.0236 18 8 3.2592 -0.1478 -1.7203 19 1 -0.3632 0.5029 -0.8963 20 1 -0.3634 -1.0275 0.0126 21 1 -0.3633 0.5248 0.8835 22 1 1.7126 1.9481 -0.9013 23 1 3.1424 1.4285 0.0228 24 1 1.6552 5.0405 2.6407 25 1 2.7319 -2.7796 1.3524 26 1 3.9339 -1.6385 0.6763 27 1 1.4190 -2.7678 -0.6701 28 1 3.0901 -2.6811 -1.3209 29 1 3.6334 -0.5817 -2.4992 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075555299.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:30 Heat of formation + Delta-G solvation = -123.961884 kcal Electronic energy + Delta-G solvation = -13285.755072 eV Core-core repulsion = 10979.478529 eV Total energy + Delta-G solvation = -2306.276543 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.23761 -38.38507 -35.76086 -34.71891 -33.13825 -29.55375 -27.15844 -26.21291 -23.51542 -21.81230 -19.27144 -18.87646 -17.98815 -16.79919 -16.55628 -16.24773 -15.40092 -15.03014 -14.84953 -14.42495 -13.73208 -13.68276 -13.36694 -13.16406 -12.86774 -12.74809 -12.73258 -12.15559 -11.90970 -11.75877 -11.31451 -11.00614 -10.74345 -10.66494 -9.96054 -8.23372 -6.24972 1.18603 1.32659 1.33883 1.47354 2.37209 3.09585 3.30875 3.41237 3.62789 3.97193 4.21009 4.32806 4.37139 4.49215 4.69781 4.86225 4.87950 5.00398 5.08069 5.21091 5.22936 5.31977 5.38331 5.51321 5.70486 6.37602 6.75853 6.89544 7.18496 7.36943 8.93732 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.039857 B = 0.014016 C = 0.012133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.350509 B = 1997.285562 C = 2307.289149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.119 4.119 3 C 0.024 3.976 4 C -0.516 4.516 5 H 0.042 0.958 6 C -0.004 4.004 7 N -0.957 5.957 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.243 1.243 11 H -0.283 1.283 12 C 0.364 3.636 13 O -0.482 6.482 14 C -0.174 4.174 15 C -0.131 4.131 16 C 0.113 3.887 17 H 0.093 0.907 18 O -0.575 6.575 19 H 0.072 0.928 20 H 0.076 0.924 21 H 0.032 0.968 22 H 0.026 0.974 23 H 0.012 0.988 24 H 0.262 0.738 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.974 -14.142 -12.965 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.120 4.120 3 C -0.014 4.014 4 C -0.554 4.554 5 H 0.060 0.940 6 C -0.199 4.199 7 N -0.599 5.599 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.166 1.166 11 H -0.209 1.209 12 C 0.240 3.760 13 O -0.356 6.356 14 C -0.212 4.212 15 C -0.169 4.169 16 C 0.054 3.946 17 H 0.111 0.889 18 O -0.383 6.383 19 H 0.091 0.909 20 H 0.095 0.905 21 H 0.051 0.949 22 H 0.044 0.956 23 H 0.030 0.970 24 H 0.071 0.929 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.132 0.868 29 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 2.749 -13.441 -11.783 18.085 hybrid contribution 0.435 0.735 -0.070 0.857 sum 3.184 -12.706 -11.854 17.666 Atomic orbital electron populations 1.21580 0.91787 1.01831 1.02312 1.21852 0.97845 0.97320 0.94940 1.19135 0.95582 0.91361 0.95287 1.21651 1.29496 0.96385 1.07891 0.93994 1.26020 0.97871 0.98747 0.97311 1.70103 1.48085 1.11686 1.30005 0.85706 0.78891 0.77415 0.80887 1.20131 1.16638 1.20907 1.25551 0.76860 0.84722 0.88842 1.90376 1.53748 1.67657 1.23781 1.22893 1.01077 0.97350 0.99842 1.23131 1.03526 0.96334 0.93870 1.22477 0.87285 0.91062 0.93741 0.88905 1.86628 1.41668 1.59032 1.51003 0.90947 0.90497 0.94869 0.95577 0.96953 0.92904 0.87963 0.87779 0.88165 0.86766 0.75567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.29 8.13 71.98 0.58 -3.71 15 2 C -0.12 -4.57 0.62 -52.25 -0.03 -4.60 15 3 C 0.02 1.18 2.45 29.85 0.07 1.25 15 4 C -0.52 -31.75 8.08 25.60 0.21 -31.54 15 5 H 0.04 2.90 5.77 -2.91 -0.02 2.88 15 6 C 0.00 -0.27 5.47 84.66 0.46 0.19 15 7 N -0.96 -64.43 13.96 21.45 0.30 -64.13 15 8 Si 0.95 47.69 27.47 68.60 1.88 49.58 15 9 H -0.28 -13.61 7.11 99.48 0.71 -12.91 15 10 H -0.24 -11.30 6.54 99.48 0.65 -10.65 15 11 H -0.28 -13.83 7.11 99.48 0.71 -13.12 15 12 C 0.36 14.92 6.30 29.71 0.19 15.11 15 13 O -0.48 -25.23 16.25 -1.44 -0.02 -25.25 15 14 C -0.17 -4.66 6.71 30.86 0.21 -4.45 15 15 C -0.13 -2.39 6.67 31.92 0.21 -2.18 15 16 C 0.11 2.88 3.66 31.71 0.12 2.99 15 17 H 0.09 1.88 7.84 -2.39 -0.02 1.86 15 18 O -0.57 -15.22 11.77 -148.98 -1.75 -16.97 15 19 H 0.07 2.37 8.14 -2.38 -0.02 2.35 15 20 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 21 H 0.03 1.50 6.56 -2.39 -0.02 1.49 15 22 H 0.03 1.27 7.20 -2.38 -0.02 1.25 15 23 H 0.01 0.63 6.89 -2.39 -0.02 0.61 15 24 H 0.26 16.46 8.31 -92.71 -0.77 15.69 15 25 H 0.10 2.34 8.14 -2.39 -0.02 2.32 15 26 H 0.10 2.75 8.14 -2.39 -0.02 2.73 15 27 H 0.10 1.45 8.14 -2.39 -0.02 1.43 15 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 15 29 H 0.39 5.47 9.12 -74.06 -0.68 4.79 15 Total: -1.00 -82.41 238.82 2.84 -79.57 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 0.42 Total: 4.15 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 2.02 Total: -26.94 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: 0.30 Total: -64.13 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -1.78 Total: -42.22 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.88 Total: 49.58 kcal Total: -82.41 2.84 -79.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075555299.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.397 kcal (2) G-P(sol) polarization free energy of solvation -82.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds