Wall clock time and date at job start Mon Mar 30 2020 20:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.47762 * 2 1 4 4 C 1.46898 * 111.00346 * 158.77730 * 3 2 1 5 5 C 1.50705 * 109.47142 * 287.81074 * 4 3 2 6 6 H 1.08000 * 119.99783 * 3.72747 * 5 4 3 7 7 C 1.37874 * 119.99950 * 183.72665 * 5 4 3 8 8 N 1.31519 * 120.00103 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00102 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46674 * 59.99836 * 9 7 5 11 11 H 1.48497 * 109.47249 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47014 * 300.00294 * 9 7 5 13 13 C 1.46900 * 110.99987 * 282.73821 * 3 2 1 14 14 H 1.09004 * 109.46643 * 191.38659 * 13 3 2 15 15 C 1.52998 * 109.46948 * 311.38431 * 13 3 2 16 16 C 1.52994 * 109.47457 * 71.39004 * 13 3 2 17 17 C 1.53001 * 117.50069 * 173.87471 * 16 13 3 18 18 C 1.52995 * 60.03197 * 107.47650 * 17 16 13 19 19 H 1.09002 * 109.47168 * 69.16738 * 1 2 3 20 20 H 1.08995 * 109.47196 * 189.17250 * 1 2 3 21 21 H 1.09002 * 109.46533 * 309.17620 * 1 2 3 22 22 H 1.09007 * 109.46837 * 240.00227 * 2 1 3 23 23 H 1.09000 * 109.47472 * 120.00924 * 2 1 3 24 24 H 1.08998 * 109.46898 * 47.80829 * 4 3 2 25 25 H 1.08993 * 109.46928 * 167.81077 * 4 3 2 26 26 H 0.96996 * 120.00067 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.47153 * 187.19246 * 15 13 3 28 28 H 1.09000 * 109.47552 * 307.19961 * 15 13 3 29 29 H 1.08998 * 109.46785 * 67.19655 * 15 13 3 30 30 H 1.09004 * 115.56460 * 28.18512 * 16 13 3 31 31 H 1.08998 * 117.49806 * 214.98030 * 17 16 13 32 32 H 1.09005 * 117.49370 * 359.97438 * 17 16 13 33 33 H 1.09004 * 117.50127 * 107.50265 * 18 17 16 34 34 H 1.09002 * 117.50199 * 252.52404 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4005 1.4551 0.4964 5 6 3.4127 1.2114 1.9836 6 1 2.4957 0.9638 2.4977 7 6 4.5944 1.3045 2.6878 8 7 5.7111 1.6055 2.0616 9 14 4.6096 1.0018 4.5311 10 1 4.1332 -0.3768 4.8101 11 1 5.9927 1.1611 5.0475 12 1 3.7148 1.9797 5.2007 13 6 1.9102 1.9821 -1.3377 14 1 2.4584 2.9240 -1.3610 15 6 2.4995 1.0231 -2.3740 16 6 0.4375 2.2410 -1.6616 17 6 0.1205 2.9938 -2.9553 18 6 -0.1656 1.4943 -2.8540 19 1 -0.3633 0.3655 -0.9605 20 1 -0.3633 -1.0145 0.1638 21 1 -0.3632 0.6492 0.7967 22 1 1.8932 -0.5138 -0.8901 23 1 1.8933 -0.5140 0.8899 24 1 4.0044 0.6962 -0.0010 25 1 3.8123 2.4422 0.2866 26 1 6.5423 1.6713 2.5571 27 1 2.5354 1.5157 -3.3457 28 1 3.5078 0.7382 -2.0735 29 1 1.8750 0.1323 -2.4411 30 1 -0.2082 2.4228 -0.8025 31 1 -0.7337 3.6708 -2.9472 32 1 0.9613 3.3050 -3.5754 33 1 -1.2081 1.1847 -2.7792 34 1 0.4871 0.8188 -3.4071 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379323379.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:26 Heat of formation + Delta-G solvation = 28.843385 kcal Electronic energy + Delta-G solvation = -13156.855037 eV Core-core repulsion = 11090.756384 eV Total energy + Delta-G solvation = -2066.098653 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.90645 -35.50477 -32.57062 -30.51906 -29.01953 -26.05708 -24.32445 -22.39382 -22.14219 -20.28090 -18.37493 -16.47892 -15.52797 -15.24221 -14.41145 -14.16143 -13.74148 -13.03028 -12.51685 -12.44436 -12.01449 -11.63871 -11.38042 -11.16733 -11.02298 -10.93739 -10.70053 -10.49758 -10.32975 -10.11088 -9.96391 -9.61297 -9.30405 -9.13503 -8.38181 -7.12226 -5.97885 -3.98656 3.36340 3.39986 3.43380 4.09721 4.45893 4.83932 5.13262 5.23322 5.36492 5.41547 5.63924 5.74314 5.79339 5.84724 5.97379 6.03179 6.12363 6.22216 6.27402 6.32443 6.42788 6.55157 6.67119 6.67655 6.83970 6.93914 7.36854 7.42110 7.88371 8.19112 8.32763 8.64037 9.09225 9.65056 11.12710 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.054891 B = 0.008993 C = 0.008417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.976426 B = 3112.850692 C = 3325.662727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.051 3.949 3 N -0.528 5.528 4 C 0.194 3.806 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.108 3.892 14 H 0.077 0.923 15 C -0.185 4.185 16 C -0.123 4.123 17 C -0.187 4.187 18 C -0.192 4.192 19 H 0.062 0.938 20 H 0.039 0.961 21 H 0.056 0.944 22 H 0.028 0.972 23 H 0.075 0.925 24 H -0.011 1.011 25 H 0.029 0.971 26 H 0.261 0.739 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.976 -0.787 -8.003 12.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.077 4.077 3 N -0.251 5.251 4 C 0.068 3.932 5 C -0.542 4.542 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.001 4.001 14 H 0.095 0.905 15 C -0.243 4.243 16 C -0.142 4.142 17 C -0.225 4.225 18 C -0.229 4.229 19 H 0.081 0.919 20 H 0.058 0.942 21 H 0.075 0.925 22 H 0.046 0.954 23 H 0.093 0.907 24 H 0.007 0.993 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.060 -0.487 -7.628 11.854 hybrid contribution 0.666 -0.597 0.430 0.992 sum -8.394 -1.084 -7.198 11.111 Atomic orbital electron populations 1.22100 0.96855 0.99971 1.02404 1.22024 0.94484 0.90542 1.00645 1.62272 1.25971 1.17229 1.19664 1.19718 0.81891 0.96449 0.95093 1.21151 0.93943 1.46481 0.92620 0.91981 1.24988 0.95550 0.95606 0.98560 1.69950 0.98890 1.49251 1.35959 0.86572 0.76822 0.78722 0.85344 1.20352 1.21414 1.20207 1.21179 0.92399 0.97616 0.88955 0.90514 1.22567 1.01602 1.00750 0.99393 1.22514 0.97688 1.02433 0.91535 1.22990 1.02948 0.94462 1.02094 1.23155 1.01204 0.94787 1.03774 0.91931 0.94196 0.92519 0.95414 0.90655 0.99295 0.95253 0.92959 0.93310 0.92290 0.91990 0.87135 0.89419 0.89297 0.89565 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 8.91 37.15 0.33 -2.22 16 2 C 0.05 1.01 5.25 -3.83 -0.02 0.99 16 3 N -0.53 -11.44 4.37 -228.09 -1.00 -12.44 16 4 C 0.19 5.09 4.30 -4.97 -0.02 5.06 16 5 C -0.50 -14.34 8.39 -34.44 -0.29 -14.63 16 6 H 0.06 1.76 7.62 -52.49 -0.40 1.36 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 9 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.11 1.97 2.65 -67.72 -0.18 1.79 16 14 H 0.08 1.48 7.74 -51.93 -0.40 1.08 16 15 C -0.18 -3.05 6.80 37.16 0.25 -2.80 16 16 C -0.12 -1.88 3.82 -90.58 -0.35 -2.22 16 17 C -0.19 -2.39 10.07 -26.73 -0.27 -2.66 16 18 C -0.19 -2.46 7.82 -26.70 -0.21 -2.67 16 19 H 0.06 0.93 4.09 -51.93 -0.21 0.72 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.03 0.52 5.35 -51.93 -0.28 0.25 16 23 H 0.07 1.65 7.00 -51.93 -0.36 1.29 16 24 H -0.01 -0.30 7.28 -51.93 -0.38 -0.68 16 25 H 0.03 0.83 7.73 -51.93 -0.40 0.43 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.05 0.70 7.86 -51.93 -0.41 0.29 16 28 H 0.06 1.10 7.05 -51.93 -0.37 0.73 16 29 H 0.06 0.97 5.06 -51.93 -0.26 0.71 16 30 H 0.11 1.79 7.44 -51.93 -0.39 1.40 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.10 8.12 -51.93 -0.42 0.68 16 33 H 0.09 1.00 8.06 -51.93 -0.42 0.58 16 34 H 0.10 1.23 5.80 -51.93 -0.30 0.93 16 LS Contribution 260.91 15.07 3.93 3.93 Total: -1.00 -29.18 260.91 -7.60 -36.78 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -5.40 Total: -0.99 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -0.85 Total: -17.90 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: -0.26 Total: -38.76 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.18 -7.60 -36.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379323379.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.622 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds