Wall clock time and date at job start Mon Mar 30 2020 20:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46996 * 120.00312 * 8 6 4 11 11 H 1.48495 * 109.46665 * 239.99993 * 8 6 4 12 12 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 13 13 C 1.46900 * 111.00017 * 58.95602 * 12 2 1 14 14 C 1.46906 * 110.99833 * 294.99905 * 12 2 1 15 15 C 1.53002 * 109.46837 * 190.00040 * 14 12 2 16 16 C 1.52998 * 115.54767 * 34.33497 * 15 14 12 17 17 C 1.53001 * 117.49890 * 248.62295 * 15 14 12 18 18 C 1.53000 * 117.49688 * 179.97438 * 15 14 12 19 19 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 21 21 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 22 22 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 23 23 H 1.08995 * 109.47238 * 60.00213 * 13 12 2 24 24 H 1.09001 * 109.46753 * 180.02562 * 13 12 2 25 25 H 1.09000 * 109.46832 * 299.99614 * 13 12 2 26 26 H 1.08992 * 109.47147 * 310.00436 * 14 12 2 27 27 H 1.09001 * 109.46991 * 70.00427 * 14 12 2 28 28 H 1.08997 * 109.47527 * 85.58459 * 16 15 14 29 29 H 1.09005 * 109.46842 * 205.57687 * 16 15 14 30 30 H 1.09004 * 109.47685 * 325.57602 * 16 15 14 31 31 H 1.08999 * 117.49837 * 0.02562 * 17 15 14 32 32 H 1.08998 * 117.49755 * 145.02058 * 17 15 14 33 33 H 1.08993 * 117.50064 * 214.97988 * 18 15 14 34 34 H 1.08999 * 117.49740 * 0.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 3.1456 -2.2874 -3.6039 10 1 1.1662 -1.5863 -4.8162 11 1 3.1467 -0.1870 -4.8165 12 7 2.0197 -0.6926 1.1994 13 6 1.5284 -2.0762 1.2458 14 6 1.6487 0.0391 2.4181 15 6 2.3789 -0.5664 3.6186 16 6 3.7852 -1.0985 3.3358 17 6 1.5362 -1.3117 4.6555 18 6 2.1240 0.0612 4.9904 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 0.7095 1.1620 -3.4843 23 1 1.8763 -2.6151 0.3646 24 1 1.9054 -2.5656 2.1438 25 1 0.4385 -2.0743 1.2638 26 1 1.9297 1.0869 2.3125 27 1 0.5722 -0.0346 2.5726 28 1 4.5051 -0.2842 3.4174 29 1 4.0320 -1.8754 4.0594 30 1 3.8205 -1.5152 2.3291 31 1 0.4617 -1.3711 4.4823 32 1 1.9836 -2.1816 5.1364 33 1 2.9578 0.0942 5.6916 34 1 1.4358 0.9052 5.0378 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693837874.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:10 Heat of formation + Delta-G solvation = 25.906842 kcal Electronic energy + Delta-G solvation = -13156.542280 eV Core-core repulsion = 11090.316290 eV Total energy + Delta-G solvation = -2066.225991 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.50706 -36.02442 -32.53806 -29.05938 -27.66556 -26.88901 -25.12266 -23.46506 -22.17576 -19.53274 -18.24549 -16.11550 -15.24434 -15.01550 -14.38001 -13.81604 -13.44502 -13.02272 -12.61442 -12.34876 -11.82395 -11.63102 -11.29015 -11.08672 -10.93310 -10.82115 -10.74606 -10.56797 -10.39113 -10.05159 -9.98369 -9.54893 -9.21888 -8.80993 -8.36060 -7.05904 -5.98010 -4.01309 3.31736 3.39530 3.44112 4.04969 4.44059 4.90719 5.10089 5.21039 5.33999 5.48268 5.60884 5.82023 6.03657 6.07072 6.14328 6.26358 6.33791 6.39626 6.43944 6.55383 6.60383 6.73524 6.87755 6.90258 6.98095 7.18190 7.55196 7.76559 7.88463 8.17872 8.44407 8.66191 9.05362 9.63676 11.09300 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.060465 B = 0.008969 C = 0.008489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.970149 B = 3121.207702 C = 3297.501890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.209 3.791 3 H 0.038 0.962 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.529 5.529 13 C 0.035 3.965 14 C 0.090 3.910 15 C -0.108 4.108 16 C -0.110 4.110 17 C -0.182 4.182 18 C -0.183 4.183 19 H 0.030 0.970 20 H 0.006 0.994 21 H 0.087 0.913 22 H 0.259 0.741 23 H 0.069 0.931 24 H 0.045 0.955 25 H 0.014 0.986 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.232 -2.874 10.300 10.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.103 3.897 3 H 0.056 0.944 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.252 5.252 13 C -0.114 4.114 14 C -0.038 4.038 15 C -0.108 4.108 16 C -0.167 4.167 17 C -0.219 4.219 18 C -0.220 4.220 19 H 0.049 0.951 20 H 0.025 0.975 21 H 0.106 0.894 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.064 0.936 25 H 0.033 0.967 26 H 0.085 0.915 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.677 -2.776 10.117 10.624 hybrid contribution -0.782 -0.315 -0.753 1.130 sum 0.895 -3.091 9.364 9.901 Atomic orbital electron populations 1.22396 1.01012 0.99286 1.00393 1.19316 0.89667 0.94577 0.86172 0.94398 1.21168 1.30310 1.12368 0.89678 0.91880 1.24937 0.95308 0.95160 0.99012 1.69901 1.37262 1.23131 1.23204 0.86478 0.78499 0.79669 0.82982 1.19757 1.21245 1.21096 1.62293 1.59151 1.01946 1.01854 1.22233 0.96962 0.91341 1.00826 1.21525 0.95460 0.97510 0.89343 1.21585 0.97307 1.02113 0.89821 1.21289 0.92664 0.99490 1.03244 1.23122 0.99323 0.95140 1.04326 1.22990 1.03230 0.96411 0.99381 0.95125 0.97509 0.89448 0.93132 0.91218 0.93591 0.96718 0.91450 0.95614 0.93073 0.94204 0.89325 0.89438 0.89420 0.89279 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.28 37.16 0.31 -3.91 16 2 C 0.21 5.30 2.34 -68.86 -0.16 5.14 16 3 H 0.04 1.06 8.03 -51.93 -0.42 0.64 16 4 C -0.50 -13.63 7.94 -34.44 -0.27 -13.90 16 5 H 0.06 1.73 6.75 -52.49 -0.35 1.38 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -25.69 11.32 55.43 0.63 -25.06 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.53 -11.41 3.50 -236.28 -0.83 -12.23 16 13 C 0.03 0.70 8.17 60.06 0.49 1.19 16 14 C 0.09 1.70 4.54 -3.82 -0.02 1.68 16 15 C -0.11 -1.69 1.55 -154.51 -0.24 -1.93 16 16 C -0.11 -1.68 9.27 37.16 0.34 -1.34 16 17 C -0.18 -2.49 9.68 -26.70 -0.26 -2.75 16 18 C -0.18 -2.42 9.97 -26.70 -0.27 -2.69 16 19 H 0.03 0.73 6.39 -51.93 -0.33 0.40 16 20 H 0.01 0.14 6.75 -51.93 -0.35 -0.21 16 21 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 22 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 23 H 0.07 1.48 6.53 -51.93 -0.34 1.14 16 24 H 0.05 0.81 6.41 -51.93 -0.33 0.48 16 25 H 0.01 0.29 6.28 -51.93 -0.33 -0.03 16 26 H 0.07 1.30 8.00 -51.93 -0.42 0.89 16 27 H 0.03 0.49 6.69 -51.93 -0.35 0.14 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.53 7.90 -51.93 -0.41 0.12 16 30 H 0.09 1.55 6.07 -51.93 -0.32 1.24 16 31 H 0.09 1.20 8.05 -51.93 -0.42 0.79 16 32 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 263.43 15.07 3.97 3.97 Total: -1.00 -27.78 263.43 -6.91 -34.69 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.49 Total: -0.76 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -0.17 Total: -17.04 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.20 Total: -37.30 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.78 -6.91 -34.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693837874.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.597 kcal (2) G-P(sol) polarization free energy of solvation -27.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds