Wall clock time and date at job start Mon Mar 30 2020 20:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46996 * 120.00312 * 8 6 4 11 11 H 1.48495 * 109.46665 * 239.99993 * 8 6 4 12 12 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 13 13 C 1.46900 * 111.00017 * 58.95602 * 12 2 1 14 14 C 1.46906 * 110.99833 * 294.99905 * 12 2 1 15 15 C 1.53002 * 109.46837 * 190.00040 * 14 12 2 16 16 C 1.52998 * 115.54767 * 34.33497 * 15 14 12 17 17 C 1.53001 * 117.49890 * 248.62295 * 15 14 12 18 18 C 1.53000 * 117.49688 * 179.97438 * 15 14 12 19 19 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 21 21 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 22 22 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 23 23 H 1.08995 * 109.47238 * 60.00213 * 13 12 2 24 24 H 1.09001 * 109.46753 * 180.02562 * 13 12 2 25 25 H 1.09000 * 109.46832 * 299.99614 * 13 12 2 26 26 H 1.08992 * 109.47147 * 310.00436 * 14 12 2 27 27 H 1.09001 * 109.46991 * 70.00427 * 14 12 2 28 28 H 1.08997 * 109.47527 * 85.58459 * 16 15 14 29 29 H 1.09005 * 109.46842 * 205.57687 * 16 15 14 30 30 H 1.09004 * 109.47685 * 325.57602 * 16 15 14 31 31 H 1.08999 * 117.49837 * 0.02562 * 17 15 14 32 32 H 1.08998 * 117.49755 * 145.02058 * 17 15 14 33 33 H 1.08993 * 117.50064 * 214.97988 * 18 15 14 34 34 H 1.08999 * 117.49740 * 0.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 3.1456 -2.2874 -3.6039 10 1 1.1662 -1.5863 -4.8162 11 1 3.1467 -0.1870 -4.8165 12 7 2.0197 -0.6926 1.1994 13 6 1.5284 -2.0762 1.2458 14 6 1.6487 0.0391 2.4181 15 6 2.3789 -0.5664 3.6186 16 6 3.7852 -1.0985 3.3358 17 6 1.5362 -1.3117 4.6555 18 6 2.1240 0.0612 4.9904 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 0.7095 1.1620 -3.4843 23 1 1.8763 -2.6151 0.3646 24 1 1.9054 -2.5656 2.1438 25 1 0.4385 -2.0743 1.2638 26 1 1.9297 1.0869 2.3125 27 1 0.5722 -0.0346 2.5726 28 1 4.5051 -0.2842 3.4174 29 1 4.0320 -1.8754 4.0594 30 1 3.8205 -1.5152 2.3291 31 1 0.4617 -1.3711 4.4823 32 1 1.9836 -2.1816 5.1364 33 1 2.9578 0.0942 5.6916 34 1 1.4358 0.9052 5.0378 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693837874.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:09 Heat of formation + Delta-G solvation = 10.213036 kcal Electronic energy + Delta-G solvation = -13157.222815 eV Core-core repulsion = 11090.316290 eV Total energy + Delta-G solvation = -2066.906525 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.92581 -37.61672 -34.55405 -30.86861 -29.00304 -28.47751 -27.18666 -25.21643 -23.22114 -21.36332 -19.59978 -18.17217 -17.05969 -16.32980 -16.10165 -15.46774 -15.01445 -14.63275 -14.19732 -13.88197 -13.50626 -13.07898 -12.94698 -12.77708 -12.57207 -12.52492 -12.35453 -12.16734 -12.01579 -11.97595 -11.70093 -11.04422 -10.75905 -10.49528 -10.39676 -8.80212 -8.10070 -6.20685 1.41888 1.43654 1.55605 2.43634 2.92219 3.19289 3.42051 3.93474 4.09164 4.14308 4.29104 4.62377 4.67063 4.68070 4.81549 4.82928 4.87867 4.91836 5.03449 5.10447 5.15257 5.21802 5.24243 5.32423 5.33247 5.54727 5.67059 5.73863 5.81223 6.20994 6.51609 6.78535 6.94118 7.48731 8.96633 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.060465 B = 0.008969 C = 0.008489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.970149 B = 3121.207702 C = 3297.501890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.511 4.511 5 H 0.058 0.942 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.534 5.534 13 C 0.044 3.956 14 C 0.093 3.907 15 C -0.132 4.132 16 C -0.104 4.104 17 C -0.171 4.171 18 C -0.166 4.166 19 H 0.031 0.969 20 H 0.022 0.978 21 H 0.060 0.940 22 H 0.260 0.740 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.052 0.948 27 H 0.022 0.978 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 -3.945 11.544 12.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.550 4.550 5 H 0.077 0.923 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.257 5.257 13 C -0.104 4.104 14 C -0.035 4.035 15 C -0.132 4.132 16 C -0.161 4.161 17 C -0.208 4.208 18 C -0.203 4.203 19 H 0.050 0.950 20 H 0.041 0.959 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.073 -3.854 11.379 12.192 hybrid contribution -0.908 0.049 -1.080 1.412 sum 1.165 -3.805 10.299 11.041 Atomic orbital electron populations 1.22188 1.00542 0.99076 0.99791 1.19080 0.89893 0.92928 0.87593 0.97915 1.21421 1.30369 1.12363 0.90827 0.92336 1.25722 0.95472 0.95848 1.01936 1.70028 1.38104 1.24298 1.23892 0.85470 0.78033 0.78645 0.79256 1.19108 1.20726 1.20776 1.62191 1.59286 1.02618 1.01638 1.22164 0.96595 0.90325 1.01346 1.21510 0.95678 0.96816 0.89496 1.21451 0.97611 1.04613 0.89566 1.21208 0.92571 1.00025 1.02339 1.23194 0.99016 0.96062 1.02501 1.23079 1.03575 0.96390 0.97278 0.94958 0.95938 0.92098 0.93044 0.92885 0.90844 0.97114 0.92909 0.95985 0.93103 0.91893 0.91917 0.89618 0.87574 0.87322 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.81 8.28 71.98 0.60 -7.21 16 2 C 0.21 11.02 2.34 44.17 0.10 11.12 16 3 H 0.00 0.17 8.03 -2.39 -0.02 0.15 16 4 C -0.51 -28.47 7.94 25.60 0.20 -28.26 16 5 H 0.06 3.25 6.75 -2.91 -0.02 3.23 16 6 C 0.01 0.46 5.30 84.66 0.45 0.91 16 7 N -0.92 -53.84 11.32 21.45 0.24 -53.60 16 8 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 N -0.53 -23.09 3.50 -901.46 -3.15 -26.25 16 13 C 0.04 1.72 8.17 127.69 1.04 2.77 16 14 C 0.09 3.46 4.54 86.30 0.39 3.85 16 15 C -0.13 -3.85 1.55 -52.18 -0.08 -3.93 16 16 C -0.10 -2.99 9.27 71.98 0.67 -2.32 16 17 C -0.17 -4.09 9.68 30.61 0.30 -3.80 16 18 C -0.17 -3.87 9.97 30.61 0.31 -3.56 16 19 H 0.03 1.55 6.39 -2.39 -0.02 1.53 16 20 H 0.02 1.00 6.75 -2.39 -0.02 0.98 16 21 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 22 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 23 H 0.05 2.24 6.53 -2.39 -0.02 2.22 16 24 H 0.07 2.45 6.41 -2.39 -0.02 2.44 16 25 H 0.01 0.42 6.28 -2.39 -0.01 0.40 16 26 H 0.05 2.06 8.00 -2.39 -0.02 2.05 16 27 H 0.02 0.82 6.69 -2.39 -0.02 0.81 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.49 7.90 -2.38 -0.02 1.47 16 30 H 0.06 2.12 6.07 -2.38 -0.01 2.11 16 31 H 0.09 2.10 8.05 -2.39 -0.02 2.08 16 32 H 0.11 2.18 8.05 -2.39 -0.02 2.16 16 33 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -59.22 263.43 4.14 -55.08 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.05 Total: 9.01 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 3.97 Total: -30.44 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -2.91 Total: -79.85 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -59.22 4.14 -55.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693837874.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.291 kcal (2) G-P(sol) polarization free energy of solvation -59.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds