Wall clock time and date at job start Mon Mar 30 2020 20:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.50701 * 109.47212 * 184.99949 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 N 1.46905 * 109.47170 * 240.00659 * 2 1 3 14 14 C 1.46897 * 111.00060 * 84.99377 * 13 2 1 15 15 C 1.52998 * 109.47081 * 180.02562 * 14 13 2 16 16 C 1.53001 * 115.54964 * 34.32912 * 15 14 13 17 17 C 1.53010 * 117.49900 * 248.62326 * 15 14 13 18 18 C 1.53000 * 59.99907 * 252.50945 * 17 15 14 19 19 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 21 21 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 22 22 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 23 23 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 24 24 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 25 25 H 1.00900 * 110.99951 * 208.95414 * 13 2 1 26 26 H 1.08993 * 109.47480 * 300.00075 * 14 13 2 27 27 H 1.09005 * 109.46926 * 60.00263 * 14 13 2 28 28 H 1.09008 * 109.46802 * 85.58772 * 16 15 14 29 29 H 1.09001 * 109.47186 * 205.57968 * 16 15 14 30 30 H 1.08997 * 109.47420 * 325.58597 * 16 15 14 31 31 H 1.08994 * 117.49635 * 0.02562 * 17 15 14 32 32 H 1.08997 * 117.49407 * 145.01911 * 17 15 14 33 33 H 1.08998 * 117.49616 * 252.50949 * 18 17 15 34 34 H 1.09003 * 117.49660 * 107.49226 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6149 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2305 -1.1927 2.3581 8 7 3.5765 -1.8371 3.2998 9 14 6.0921 -1.0602 2.4371 10 1 6.5836 -0.2898 1.2666 11 1 6.4861 -0.3640 3.6882 12 1 6.6863 -2.4211 2.4195 13 7 2.0197 -0.6924 -1.1996 14 6 2.0823 0.2228 -2.3469 15 6 2.5949 -0.5329 -3.5746 16 6 2.1682 -1.9989 -3.6728 17 6 3.9826 -0.1636 -4.1029 18 6 2.7323 0.2520 -4.8807 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 1.7517 -1.7716 1.2054 23 1 1.6054 -0.2618 2.1369 24 1 4.0609 -2.2439 4.0352 25 1 2.9173 -1.1204 -1.0289 26 1 1.0870 0.6164 -2.5525 27 1 2.7587 1.0464 -2.1182 28 1 1.1897 -2.0613 -4.1492 29 1 2.8971 -2.5505 -4.2664 30 1 2.1135 -2.4292 -2.6728 31 1 4.5304 0.6173 -3.5756 32 1 4.5918 -0.9653 -4.5205 33 1 2.5191 -0.2762 -5.8100 34 1 2.4576 1.3067 -4.8655 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695810094.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:20 Heat of formation + Delta-G solvation = 2.932008 kcal Electronic energy + Delta-G solvation = -12762.242546 eV Core-core repulsion = 10695.020292 eV Total energy + Delta-G solvation = -2067.222254 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.29802 -35.89701 -32.63867 -30.34131 -27.93644 -27.36243 -24.78229 -22.79955 -22.25448 -19.38765 -18.61382 -16.33641 -15.56568 -14.86393 -14.47673 -14.31041 -13.62409 -12.94715 -12.75079 -12.27963 -11.95779 -11.78622 -11.59375 -11.26586 -11.24815 -11.11249 -10.76793 -10.60011 -10.48532 -10.23204 -9.92295 -9.41221 -9.14482 -9.03078 -8.38853 -7.58116 -6.01850 -4.04632 3.29337 3.37256 3.40509 3.93875 4.44088 4.74872 4.99740 5.10427 5.30325 5.42088 5.47153 5.74598 5.90837 5.91646 6.01966 6.05062 6.16837 6.26230 6.27789 6.30287 6.37164 6.44948 6.58913 6.77196 6.96863 6.98533 7.56470 7.66198 7.98369 8.10645 8.32747 8.40158 9.01798 9.59525 11.09130 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.031526 B = 0.009830 C = 0.008145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.950506 B = 2847.762318 C = 3436.663560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.086 3.914 3 H 0.027 0.973 4 C 0.020 3.980 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.678 5.678 14 C 0.096 3.904 15 C -0.116 4.116 16 C -0.110 4.110 17 C -0.180 4.180 18 C -0.181 4.181 19 H 0.054 0.946 20 H 0.047 0.953 21 H 0.035 0.965 22 H 0.026 0.974 23 H 0.021 0.979 24 H 0.260 0.740 25 H 0.355 0.645 26 H 0.064 0.936 27 H 0.023 0.977 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 2.649 -12.060 12.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.045 0.955 4 C -0.017 4.017 5 C -0.560 4.560 6 H 0.070 0.930 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.312 5.312 14 C -0.034 4.034 15 C -0.117 4.117 16 C -0.167 4.167 17 C -0.217 4.217 18 C -0.218 4.218 19 H 0.074 0.926 20 H 0.066 0.934 21 H 0.054 0.946 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.070 0.930 25 H 0.176 0.824 26 H 0.083 0.917 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.638 2.301 -12.047 12.545 hybrid contribution 1.898 0.689 0.328 2.045 sum -0.741 2.990 -11.719 12.117 Atomic orbital electron populations 1.21789 0.96779 1.01295 0.99387 1.21612 0.93321 0.95842 0.91521 0.95478 1.19284 0.95397 0.96210 0.90834 1.21215 0.92259 1.34313 1.08233 0.92997 1.24989 0.98219 0.95229 0.95718 1.69972 1.35372 1.35718 1.11971 0.86585 0.86025 0.77782 0.77894 1.19850 1.21085 1.20956 1.60572 1.34646 1.31860 1.04135 1.21415 0.99131 0.93132 0.89700 1.21584 0.99004 0.96864 0.94227 1.21255 0.99659 0.92283 1.03498 1.23149 0.90905 1.03455 1.04186 1.22980 1.02949 1.00353 0.95535 0.92645 0.93412 0.94557 0.95565 0.96103 0.93023 0.82387 0.91720 0.95904 0.93013 0.93764 0.89609 0.89129 0.89108 0.89168 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.41 37.16 0.35 -2.12 16 2 C 0.09 1.82 2.59 -67.71 -0.18 1.65 16 3 H 0.03 0.59 7.80 -51.93 -0.40 0.19 16 4 C 0.02 0.51 4.57 -27.88 -0.13 0.39 16 5 C -0.52 -14.43 8.12 -34.44 -0.28 -14.71 16 6 H 0.05 1.41 7.49 -52.49 -0.39 1.01 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.68 -13.17 4.83 -106.73 -0.52 -13.68 16 14 C 0.10 1.60 5.62 -3.83 -0.02 1.58 16 15 C -0.12 -1.69 2.51 -154.50 -0.39 -2.08 16 16 C -0.11 -1.56 9.73 37.16 0.36 -1.20 16 17 C -0.18 -2.42 9.82 -26.73 -0.26 -2.68 16 18 C -0.18 -2.22 9.97 -26.73 -0.27 -2.49 16 19 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 20 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 21 H 0.04 0.59 7.45 -51.93 -0.39 0.21 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 25 H 0.36 7.55 7.09 -39.29 -0.28 7.27 16 26 H 0.06 1.04 7.43 -51.93 -0.39 0.65 16 27 H 0.02 0.40 7.81 -51.93 -0.41 -0.01 16 28 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.04 0.56 7.90 -51.93 -0.41 0.15 16 30 H 0.09 1.38 6.70 -51.93 -0.35 1.03 16 31 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 32 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 277.87 15.07 4.19 4.19 Total: -1.00 -28.49 277.87 -7.46 -35.95 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.94 Total: 2.95 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -0.91 Total: -20.06 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.22 Total: -39.56 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.49 -7.46 -35.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810094.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.880 kcal (2) G-P(sol) polarization free energy of solvation -28.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds