Wall clock time and date at job start Mon Mar 30 2020 20:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46904 * 109.47024 * 119.99953 * 2 1 3 14 14 C 1.46895 * 110.99693 * 275.00073 * 13 2 1 15 15 C 1.53006 * 109.47126 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.46980 * 180.02562 * 15 14 13 17 17 C 1.53002 * 117.49745 * 243.61597 * 16 15 14 18 18 C 1.53002 * 60.00040 * 252.51633 * 17 16 15 19 19 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 20 20 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 22 22 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 23 23 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 24 24 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 25 25 H 1.00894 * 110.99680 * 38.95122 * 13 2 1 26 26 H 1.08999 * 109.47253 * 299.99875 * 14 13 2 27 27 H 1.09005 * 109.47412 * 59.99805 * 14 13 2 28 28 H 1.09003 * 109.46687 * 299.99474 * 15 14 13 29 29 H 1.08992 * 109.47039 * 59.99804 * 15 14 13 30 30 H 1.08997 * 115.55624 * 29.32913 * 16 15 14 31 31 H 1.08998 * 117.49838 * 0.02562 * 17 16 15 32 32 H 1.08999 * 117.49839 * 145.02151 * 17 16 15 33 33 H 1.09003 * 117.49449 * 252.50694 * 18 17 16 34 34 H 1.08999 * 117.50108 * 107.49193 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3468 15 6 2.5962 -0.5328 3.5742 16 6 2.6609 0.4202 4.7694 17 6 4.0382 0.7061 5.3712 18 6 3.0409 -0.1743 6.1270 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.6055 -0.2619 -2.1370 23 1 1.7517 -1.7715 -1.2055 24 1 6.0246 -1.4984 -3.1541 25 1 1.4495 -1.4978 1.4100 26 1 2.7588 1.0462 2.1182 27 1 1.0870 0.6164 2.5525 28 1 1.9200 -1.3566 3.8031 29 1 3.5916 -0.9262 3.3684 30 1 1.9360 1.2341 4.7616 31 1 4.8983 0.2156 4.9153 32 1 4.2197 1.7084 5.7591 33 1 2.5664 0.2489 7.0124 34 1 3.2448 -1.2442 6.1687 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695811436.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:22 Heat of formation + Delta-G solvation = 5.969670 kcal Electronic energy + Delta-G solvation = -12404.495773 eV Core-core repulsion = 10337.405242 eV Total energy + Delta-G solvation = -2067.090531 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.84902 -36.49553 -32.84484 -31.53847 -28.20313 -27.43123 -23.02431 -22.37449 -21.86605 -20.47232 -19.47883 -16.52639 -15.70722 -15.09687 -14.45400 -14.36548 -13.80953 -13.55308 -12.85357 -12.33372 -12.17301 -11.82544 -11.63529 -11.54360 -11.28996 -11.11414 -10.94667 -10.69223 -10.24466 -10.04154 -9.79159 -9.65221 -9.52409 -8.98093 -8.37413 -7.54863 -5.85894 -3.79357 3.40000 3.46867 3.49738 3.83799 4.55823 4.59310 4.96259 4.99343 5.09938 5.41884 5.48553 5.55926 5.62771 5.64198 5.77964 5.85059 5.90098 5.96581 6.04933 6.09991 6.16823 6.37315 6.43578 6.55283 6.58235 6.86418 7.22551 7.36940 7.87674 7.97404 8.16734 8.78210 9.25876 9.77361 11.28399 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041157 B = 0.007454 C = 0.006593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.163147 B = 3755.269651 C = 4246.041900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.098 3.902 3 H 0.069 0.931 4 C -0.005 4.005 5 C -0.487 4.487 6 H 0.076 0.924 7 C 0.059 3.941 8 N -0.910 5.910 9 Si 0.876 3.124 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.291 1.291 13 N -0.665 5.665 14 C 0.065 3.935 15 C -0.087 4.087 16 C -0.148 4.148 17 C -0.180 4.180 18 C -0.185 4.185 19 H 0.056 0.944 20 H 0.050 0.950 21 H 0.040 0.960 22 H 0.016 0.984 23 H 0.011 0.989 24 H 0.259 0.741 25 H 0.329 0.671 26 H 0.069 0.931 27 H 0.016 0.984 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.311 2.079 12.214 14.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.012 4.012 3 H 0.088 0.912 4 C -0.042 4.042 5 C -0.526 4.526 6 H 0.094 0.906 7 C -0.140 4.140 8 N -0.551 5.551 9 Si 0.704 3.296 10 H -0.206 1.206 11 H -0.194 1.194 12 H -0.217 1.217 13 N -0.294 5.294 14 C -0.064 4.064 15 C -0.125 4.125 16 C -0.167 4.167 17 C -0.217 4.217 18 C -0.222 4.222 19 H 0.075 0.925 20 H 0.069 0.931 21 H 0.060 0.940 22 H 0.034 0.966 23 H 0.029 0.971 24 H 0.069 0.931 25 H 0.146 0.854 26 H 0.088 0.912 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.488 2.116 11.930 14.243 hybrid contribution -1.337 -0.436 -0.524 1.501 sum -8.826 1.680 11.406 14.519 Atomic orbital electron populations 1.22592 0.99540 1.01163 1.00856 1.21552 0.89652 0.98310 0.91667 0.91248 1.19617 0.97846 0.95095 0.91669 1.21051 0.89556 1.33564 1.08380 0.90590 1.25023 0.94688 0.96397 0.97901 1.69919 1.06472 1.46504 1.32226 0.86855 0.80332 0.80604 0.81833 1.20602 1.19359 1.21718 1.60456 1.57545 1.08700 1.02733 1.21906 0.98097 0.96036 0.90406 1.21159 1.02564 0.96735 0.92061 1.22303 0.98660 1.01751 0.93937 1.23036 0.93700 1.00673 1.04307 1.22945 1.04466 0.99552 0.95273 0.92516 0.93094 0.94043 0.96606 0.97080 0.93142 0.85402 0.91211 0.96604 0.92195 0.90628 0.88204 0.88502 0.89197 0.89281 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 9.16 37.16 0.34 -2.60 16 2 C 0.10 1.95 2.53 -67.71 -0.17 1.78 16 3 H 0.07 1.44 7.80 -51.93 -0.40 1.04 16 4 C 0.00 -0.11 3.72 -27.88 -0.10 -0.21 16 5 C -0.49 -14.18 9.39 -34.44 -0.32 -14.51 16 6 H 0.08 2.42 7.99 -52.49 -0.42 2.00 16 7 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16 8 N -0.91 -28.95 13.96 55.43 0.77 -28.18 16 9 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 N -0.66 -12.54 5.96 -106.72 -0.64 -13.18 16 14 C 0.07 1.03 5.44 -3.82 -0.02 1.01 16 15 C -0.09 -1.22 5.76 -26.73 -0.15 -1.37 16 16 C -0.15 -1.77 5.74 -90.62 -0.52 -2.29 16 17 C -0.18 -2.06 10.18 -26.73 -0.27 -2.33 16 18 C -0.19 -1.95 10.25 -26.73 -0.27 -2.23 16 19 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 20 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 21 H 0.04 0.59 7.45 -51.93 -0.39 0.21 16 22 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 23 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 24 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 25 H 0.33 5.65 8.47 -39.29 -0.33 5.32 16 26 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 27 H 0.02 0.23 7.44 -51.93 -0.39 -0.16 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.18 7.88 -51.93 -0.41 0.77 16 30 H 0.10 1.14 8.07 -51.93 -0.42 0.72 16 31 H 0.10 1.17 8.03 -51.93 -0.42 0.75 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 278.88 15.07 4.20 4.20 Total: -1.00 -31.08 278.88 -7.99 -39.07 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.06 Total: 1.49 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -1.60 Total: -21.09 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.14 Total: -41.35 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.08 -7.99 -39.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811436.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.037 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds