Wall clock time and date at job start Mon Mar 30 2020 20:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46904 * 109.47024 * 119.99953 * 2 1 3 14 14 C 1.46895 * 110.99693 * 275.00073 * 13 2 1 15 15 C 1.53006 * 109.47126 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.46980 * 180.02562 * 15 14 13 17 17 C 1.53002 * 117.49745 * 243.61597 * 16 15 14 18 18 C 1.53002 * 60.00040 * 252.51633 * 17 16 15 19 19 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 20 20 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 22 22 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 23 23 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 24 24 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 25 25 H 1.00894 * 110.99680 * 38.95122 * 13 2 1 26 26 H 1.08999 * 109.47253 * 299.99875 * 14 13 2 27 27 H 1.09005 * 109.47412 * 59.99805 * 14 13 2 28 28 H 1.09003 * 109.46687 * 299.99474 * 15 14 13 29 29 H 1.08992 * 109.47039 * 59.99804 * 15 14 13 30 30 H 1.08997 * 115.55624 * 29.32913 * 16 15 14 31 31 H 1.08998 * 117.49838 * 0.02562 * 17 16 15 32 32 H 1.08999 * 117.49839 * 145.02151 * 17 16 15 33 33 H 1.09003 * 117.49449 * 252.50694 * 18 17 16 34 34 H 1.08999 * 117.50108 * 107.49193 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3468 15 6 2.5962 -0.5328 3.5742 16 6 2.6609 0.4202 4.7694 17 6 4.0382 0.7061 5.3712 18 6 3.0409 -0.1743 6.1270 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.6055 -0.2619 -2.1370 23 1 1.7517 -1.7715 -1.2055 24 1 6.0246 -1.4984 -3.1541 25 1 1.4495 -1.4978 1.4100 26 1 2.7588 1.0462 2.1182 27 1 1.0870 0.6164 2.5525 28 1 1.9200 -1.3566 3.8031 29 1 3.5916 -0.9262 3.3684 30 1 1.9360 1.2341 4.7616 31 1 4.8983 0.2156 4.9153 32 1 4.2197 1.7084 5.7591 33 1 2.5664 0.2489 7.0124 34 1 3.2448 -1.2442 6.1687 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695811436.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:21 Heat of formation + Delta-G solvation = -14.067536 kcal Electronic energy + Delta-G solvation = -12405.364652 eV Core-core repulsion = 10337.405242 eV Total energy + Delta-G solvation = -2067.959410 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.99788 -37.83494 -34.84834 -33.19257 -29.99244 -28.81563 -24.80811 -23.46888 -23.09132 -21.73309 -20.93984 -18.76687 -16.88504 -16.39291 -16.25431 -15.73463 -15.18562 -14.88473 -14.63239 -13.99197 -13.77707 -13.41477 -13.13690 -12.71392 -12.54806 -12.43792 -12.26033 -12.10444 -11.85504 -11.68048 -11.45726 -11.22398 -10.98109 -10.70591 -10.66842 -8.98319 -8.16696 -6.15848 1.38627 1.40505 1.51804 2.43643 2.92254 3.16099 3.37183 3.97021 4.04412 4.05936 4.19246 4.31964 4.39206 4.45044 4.59506 4.67444 4.80340 4.84898 4.92326 5.05669 5.08505 5.14560 5.17820 5.24968 5.28710 5.33554 5.46631 5.54407 5.77436 6.36027 6.52318 6.78311 6.92481 7.44747 9.01161 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041157 B = 0.007454 C = 0.006593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.163147 B = 3755.269651 C = 4246.041900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.100 3.900 3 H 0.051 0.949 4 C -0.003 4.003 5 C -0.491 4.491 6 H 0.029 0.971 7 C -0.008 4.008 8 N -0.962 5.962 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.246 1.246 12 H -0.289 1.289 13 N -0.691 5.691 14 C 0.071 3.929 15 C -0.080 4.080 16 C -0.157 4.157 17 C -0.191 4.191 18 C -0.169 4.169 19 H 0.063 0.937 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.021 0.979 23 H 0.016 0.984 24 H 0.261 0.739 25 H 0.339 0.661 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.877 1.612 12.655 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.010 4.010 3 H 0.069 0.931 4 C -0.041 4.041 5 C -0.530 4.530 6 H 0.047 0.953 7 C -0.202 4.202 8 N -0.604 5.604 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.169 1.169 12 H -0.215 1.215 13 N -0.322 5.322 14 C -0.058 4.058 15 C -0.118 4.118 16 C -0.176 4.176 17 C -0.228 4.228 18 C -0.206 4.206 19 H 0.082 0.918 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.039 0.961 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.158 0.842 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.129 0.871 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.078 1.655 12.392 16.058 hybrid contribution -0.453 -0.243 -0.589 0.782 sum -10.531 1.411 11.803 15.881 Atomic orbital electron populations 1.22422 0.95788 1.02361 1.02289 1.21349 0.92541 0.96619 0.90462 0.93056 1.19590 0.94344 0.95958 0.94211 1.21323 0.92291 1.32408 1.06942 0.95266 1.26022 0.95579 0.97684 1.00943 1.70098 1.08614 1.48226 1.33498 0.85657 0.79646 0.79239 0.77976 1.19675 1.16949 1.21496 1.60316 1.58480 1.09876 1.03510 1.21854 0.98784 0.95122 0.90014 1.21054 1.01169 0.97378 0.92173 1.22269 0.99297 1.02040 0.93984 1.23092 0.93197 1.01659 1.04882 1.23029 1.02992 0.99570 0.94990 0.91840 0.91972 0.91900 0.96108 0.96556 0.93065 0.84236 0.93560 0.94293 0.90934 0.93251 0.87111 0.89953 0.87939 0.87226 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.94 9.16 71.98 0.66 -4.28 16 2 C 0.10 3.91 2.53 44.91 0.11 4.02 16 3 H 0.05 2.15 7.80 -2.39 -0.02 2.14 16 4 C 0.00 -0.15 3.72 29.85 0.11 -0.04 16 5 C -0.49 -29.29 9.39 25.60 0.24 -29.05 16 6 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 7 C -0.01 -0.48 5.47 84.65 0.46 -0.02 16 8 N -0.96 -62.96 13.96 21.45 0.30 -62.66 16 9 Si 0.95 45.92 27.47 68.60 1.88 47.80 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 13 N -0.69 -25.78 5.96 -491.56 -2.93 -28.71 16 14 C 0.07 2.23 5.44 86.31 0.47 2.70 16 15 C -0.08 -2.19 5.76 30.60 0.18 -2.01 16 16 C -0.16 -3.56 5.74 -10.79 -0.06 -3.62 16 17 C -0.19 -4.24 10.18 30.60 0.31 -3.93 16 18 C -0.17 -3.22 10.25 30.60 0.31 -2.91 16 19 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 20 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 21 H 0.06 1.57 7.45 -2.39 -0.02 1.55 16 22 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 23 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 24 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 25 H 0.34 11.17 8.47 -89.70 -0.76 10.41 16 26 H 0.05 1.64 8.05 -2.39 -0.02 1.62 16 27 H 0.04 1.05 7.44 -2.38 -0.02 1.03 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 1.59 7.88 -2.39 -0.02 1.57 16 30 H 0.11 2.28 8.07 -2.39 -0.02 2.26 16 31 H 0.08 2.04 8.03 -2.39 -0.02 2.02 16 32 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -68.28 278.88 2.28 -66.00 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.23 Total: 16.70 kcal Atomic # 6 Polarization: -41.93 SS G_CDS: 2.80 Total: -39.13 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -2.63 Total: -91.37 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.88 Total: 47.80 kcal Total: -68.28 2.28 -66.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811436.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.936 kcal (2) G-P(sol) polarization free energy of solvation -68.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds