Wall clock time and date at job start Mon Mar 30 2020 20:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46809 * 2 1 4 4 C 1.52998 * 109.47497 * 119.99903 * 2 1 3 5 5 C 1.50699 * 109.47284 * 185.00064 * 4 2 1 6 6 H 1.07996 * 119.99826 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99557 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99670 * 180.02562 * 7 5 4 9 9 Si 1.86790 * 120.00450 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47222 * 89.99805 * 9 7 5 11 11 H 1.48505 * 109.47426 * 209.99916 * 9 7 5 12 12 H 1.48505 * 109.46959 * 329.99878 * 9 7 5 13 13 N 1.46900 * 109.47145 * 240.00440 * 2 1 3 14 14 C 1.46894 * 111.00559 * 84.99825 * 13 2 1 15 15 C 1.52997 * 109.47515 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.53003 * 117.49371 * 243.61962 * 16 15 14 18 18 C 1.53001 * 117.49608 * 175.00037 * 16 15 14 19 19 H 1.09002 * 109.47075 * 300.00074 * 1 2 3 20 20 H 1.09001 * 109.47164 * 60.00019 * 1 2 3 21 21 H 1.08998 * 109.46626 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47087 * 305.00608 * 4 2 1 23 23 H 1.09005 * 109.46982 * 65.00051 * 4 2 1 24 24 H 0.96997 * 119.99958 * 179.97438 * 8 7 5 25 25 H 1.00905 * 110.99607 * 208.95322 * 13 2 1 26 26 H 1.09002 * 109.47104 * 59.99767 * 14 13 2 27 27 H 1.08998 * 109.46828 * 300.00600 * 14 13 2 28 28 H 1.09002 * 109.47153 * 59.99762 * 15 14 13 29 29 H 1.09001 * 109.46832 * 299.99953 * 15 14 13 30 30 H 1.08995 * 115.55630 * 29.32647 * 16 15 14 31 31 H 1.08998 * 117.50656 * 0.02562 * 17 16 15 32 32 H 1.09001 * 117.49674 * 145.02590 * 17 16 15 33 33 H 1.09003 * 117.49710 * 214.97494 * 18 16 15 34 34 H 1.08998 * 117.50185 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6148 1.3126 6 1 4.0789 -0.0854 0.5395 7 6 4.2305 -1.1935 2.3577 8 7 5.5411 -1.1002 2.4134 9 14 3.3018 -2.1098 3.6945 10 1 3.1712 -3.5396 3.3154 11 1 4.0451 -2.0033 4.9757 12 1 1.9506 -1.5149 3.8553 13 7 2.0197 -0.6924 -1.1995 14 6 2.0825 0.2226 -2.3469 15 6 2.5950 -0.5331 -3.5745 16 6 2.6610 0.4202 -4.7694 17 6 1.7543 0.1187 -5.9644 18 6 3.2624 -0.1173 -6.0695 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 1.6054 -0.2618 2.1369 23 1 1.7517 -1.7715 1.2056 24 1 6.0255 -1.5069 3.1488 25 1 2.9174 -1.1204 -1.0287 26 1 2.7588 1.0463 -2.1182 27 1 1.0871 0.6164 -2.5525 28 1 1.9183 -1.3565 -3.8030 29 1 3.5904 -0.9271 -3.3691 30 1 2.8422 1.4671 -4.5262 31 1 1.1106 -0.7584 -5.8993 32 1 1.3388 0.9675 -6.5076 33 1 3.8389 0.5762 -6.6818 34 1 3.6114 -1.1499 -6.0735 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695811438.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:24 Heat of formation + Delta-G solvation = 0.217271 kcal Electronic energy + Delta-G solvation = -12403.834056 eV Core-core repulsion = 10336.494082 eV Total energy + Delta-G solvation = -2067.339974 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.82490 -36.42228 -32.89764 -31.60288 -28.07400 -27.68965 -23.11040 -22.38451 -21.71720 -20.39485 -19.23363 -16.80559 -15.77798 -14.94270 -14.80459 -14.38319 -13.68734 -13.65462 -12.69262 -12.45244 -11.91722 -11.71863 -11.61081 -11.56445 -11.31700 -11.08957 -10.96120 -10.71415 -10.28062 -10.12825 -9.77043 -9.72966 -9.41930 -9.19354 -8.55201 -7.65466 -6.06433 -4.04783 3.31865 3.38945 3.43314 3.83063 4.44844 4.58850 4.95396 4.98015 5.13272 5.33666 5.42967 5.61211 5.61494 5.82100 5.83436 5.89409 6.04709 6.10209 6.11974 6.19202 6.26305 6.43129 6.46966 6.56915 6.74706 6.81782 7.21455 7.30870 7.76895 7.95178 8.28091 8.49351 8.95640 9.56387 11.06631 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.045961 B = 0.007173 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.064340 B = 3902.657321 C = 4337.997215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.095 3.905 3 H 0.034 0.966 4 C -0.017 4.017 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.687 5.687 14 C 0.063 3.937 15 C -0.087 4.087 16 C -0.146 4.146 17 C -0.183 4.183 18 C -0.184 4.184 19 H 0.047 0.953 20 H 0.040 0.960 21 H 0.054 0.946 22 H 0.021 0.979 23 H 0.021 0.979 24 H 0.263 0.737 25 H 0.357 0.643 26 H 0.024 0.976 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 1.875 -11.581 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.014 4.014 3 H 0.052 0.948 4 C -0.055 4.055 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.321 5.321 14 C -0.066 4.066 15 C -0.125 4.125 16 C -0.165 4.165 17 C -0.220 4.220 18 C -0.221 4.221 19 H 0.066 0.934 20 H 0.059 0.941 21 H 0.073 0.927 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.073 0.927 25 H 0.178 0.822 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.772 1.574 -11.625 14.072 hybrid contribution 0.492 0.111 0.953 1.078 sum -7.280 1.685 -10.673 13.029 Atomic orbital electron populations 1.21827 0.96718 1.01294 0.99720 1.21382 0.93189 0.96045 0.90792 0.94796 1.19775 0.96996 0.95965 0.92752 1.21091 0.89921 1.35243 1.09872 0.91298 1.25016 0.94692 0.95730 0.97877 1.69919 1.06595 1.45272 1.32321 0.86738 0.80393 0.80566 0.81338 1.20222 1.21524 1.19035 1.60574 1.34975 1.32227 1.04334 1.21883 0.99563 0.94230 0.90972 1.21155 1.01625 0.97201 0.92535 1.22325 1.04218 1.00318 0.89659 1.23016 0.93172 1.03178 1.02602 1.22946 0.95916 1.02244 1.00987 0.93377 0.94119 0.92708 0.96118 0.96086 0.92739 0.82217 0.95827 0.92015 0.91279 0.91572 0.88032 0.88845 0.89281 0.89165 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.42 37.16 0.35 -2.05 16 2 C 0.10 1.97 2.59 -67.71 -0.18 1.79 16 3 H 0.03 0.73 7.80 -51.92 -0.40 0.32 16 4 C -0.02 -0.42 3.64 -27.88 -0.10 -0.52 16 5 C -0.52 -14.67 8.67 -34.44 -0.30 -14.97 16 6 H 0.07 2.07 7.73 -52.49 -0.41 1.66 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 9 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 N -0.69 -13.36 6.31 -106.73 -0.67 -14.04 16 14 C 0.06 1.04 5.44 -3.83 -0.02 1.02 16 15 C -0.09 -1.25 5.76 -26.73 -0.15 -1.40 16 16 C -0.15 -1.79 5.74 -90.62 -0.52 -2.31 16 17 C -0.18 -1.94 10.18 -26.73 -0.27 -2.21 16 18 C -0.18 -1.98 10.25 -26.73 -0.27 -2.25 16 19 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 20 H 0.04 0.64 7.45 -51.93 -0.39 0.25 16 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 23 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.36 7.66 7.21 -39.29 -0.28 7.38 16 26 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 27 H 0.06 0.96 7.44 -51.93 -0.39 0.58 16 28 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.10 1.23 8.07 -51.93 -0.42 0.81 16 31 H 0.09 0.97 8.03 -51.93 -0.42 0.56 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 277.24 15.07 4.18 4.18 Total: -1.00 -29.17 277.24 -7.96 -37.13 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.00 Total: 3.46 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -1.56 Total: -21.02 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.10 Total: -40.90 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.17 -7.96 -37.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811438.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.348 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds