Wall clock time and date at job start Mon Mar 30 2020 20:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46809 * 2 1 4 4 C 1.52998 * 109.47497 * 119.99903 * 2 1 3 5 5 C 1.50699 * 109.47284 * 185.00064 * 4 2 1 6 6 H 1.07996 * 119.99826 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99557 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99670 * 180.02562 * 7 5 4 9 9 Si 1.86790 * 120.00450 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47222 * 89.99805 * 9 7 5 11 11 H 1.48505 * 109.47426 * 209.99916 * 9 7 5 12 12 H 1.48505 * 109.46959 * 329.99878 * 9 7 5 13 13 N 1.46900 * 109.47145 * 240.00440 * 2 1 3 14 14 C 1.46894 * 111.00559 * 84.99825 * 13 2 1 15 15 C 1.52997 * 109.47515 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.53003 * 117.49371 * 243.61962 * 16 15 14 18 18 C 1.53001 * 117.49608 * 175.00037 * 16 15 14 19 19 H 1.09002 * 109.47075 * 300.00074 * 1 2 3 20 20 H 1.09001 * 109.47164 * 60.00019 * 1 2 3 21 21 H 1.08998 * 109.46626 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47087 * 305.00608 * 4 2 1 23 23 H 1.09005 * 109.46982 * 65.00051 * 4 2 1 24 24 H 0.96997 * 119.99958 * 179.97438 * 8 7 5 25 25 H 1.00905 * 110.99607 * 208.95322 * 13 2 1 26 26 H 1.09002 * 109.47104 * 59.99767 * 14 13 2 27 27 H 1.08998 * 109.46828 * 300.00600 * 14 13 2 28 28 H 1.09002 * 109.47153 * 59.99762 * 15 14 13 29 29 H 1.09001 * 109.46832 * 299.99953 * 15 14 13 30 30 H 1.08995 * 115.55630 * 29.32647 * 16 15 14 31 31 H 1.08998 * 117.50656 * 0.02562 * 17 16 15 32 32 H 1.09001 * 117.49674 * 145.02590 * 17 16 15 33 33 H 1.09003 * 117.49710 * 214.97494 * 18 16 15 34 34 H 1.08998 * 117.50185 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6148 1.3126 6 1 4.0789 -0.0854 0.5395 7 6 4.2305 -1.1935 2.3577 8 7 5.5411 -1.1002 2.4134 9 14 3.3018 -2.1098 3.6945 10 1 3.1712 -3.5396 3.3154 11 1 4.0451 -2.0033 4.9757 12 1 1.9506 -1.5149 3.8553 13 7 2.0197 -0.6924 -1.1995 14 6 2.0825 0.2226 -2.3469 15 6 2.5950 -0.5331 -3.5745 16 6 2.6610 0.4202 -4.7694 17 6 1.7543 0.1187 -5.9644 18 6 3.2624 -0.1173 -6.0695 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 1.6054 -0.2618 2.1369 23 1 1.7517 -1.7715 1.2056 24 1 6.0255 -1.5069 3.1488 25 1 2.9174 -1.1204 -1.0287 26 1 2.7588 1.0463 -2.1182 27 1 1.0871 0.6164 -2.5525 28 1 1.9183 -1.3565 -3.8030 29 1 3.5904 -0.9271 -3.3691 30 1 2.8422 1.4671 -4.5262 31 1 1.1106 -0.7584 -5.8993 32 1 1.3388 0.9675 -6.5076 33 1 3.8389 0.5762 -6.6818 34 1 3.6114 -1.1499 -6.0735 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695811438.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:24 Heat of formation + Delta-G solvation = -17.769717 kcal Electronic energy + Delta-G solvation = -12404.614030 eV Core-core repulsion = 10336.494082 eV Total energy + Delta-G solvation = -2068.119948 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.98364 -37.83227 -34.87720 -33.24327 -29.90137 -29.08622 -24.88398 -23.37510 -23.06428 -21.56737 -20.78930 -18.97407 -17.02955 -16.47934 -16.22072 -16.01866 -15.20328 -14.80730 -14.49753 -14.16722 -13.53692 -13.44047 -13.11976 -12.73435 -12.48552 -12.38475 -12.31350 -12.20443 -11.89216 -11.76568 -11.36640 -11.25269 -10.98321 -10.76823 -10.71932 -9.23672 -8.29332 -6.32909 1.37484 1.38173 1.50377 2.36710 2.92934 3.04367 3.36283 3.95693 4.03690 4.06918 4.21574 4.33550 4.41954 4.50207 4.65234 4.73195 4.80955 4.84734 4.96354 5.07758 5.08941 5.11887 5.16398 5.22894 5.29972 5.37135 5.43270 5.50385 5.67423 6.22933 6.37627 6.57765 6.73483 7.31684 8.86943 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.045961 B = 0.007173 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.064340 B = 3902.657321 C = 4337.997215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.095 3.905 3 H 0.018 0.982 4 C -0.013 4.013 5 C -0.526 4.526 6 H 0.031 0.969 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.951 3.049 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.248 1.248 13 N -0.688 5.688 14 C 0.066 3.934 15 C -0.079 4.079 16 C -0.165 4.165 17 C -0.170 4.170 18 C -0.180 4.180 19 H 0.060 0.940 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.024 0.976 23 H 0.023 0.977 24 H 0.265 0.735 25 H 0.340 0.660 26 H 0.009 0.991 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.388 1.567 -12.025 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.015 4.015 3 H 0.036 0.964 4 C -0.051 4.051 5 C -0.564 4.564 6 H 0.049 0.951 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.775 3.225 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.171 1.171 13 N -0.320 5.320 14 C -0.063 4.063 15 C -0.116 4.116 16 C -0.184 4.184 17 C -0.207 4.207 18 C -0.217 4.217 19 H 0.079 0.921 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.043 0.957 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.159 0.841 26 H 0.027 0.973 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.871 1.279 -12.089 15.660 hybrid contribution 1.196 0.260 1.015 1.590 sum -8.675 1.539 -11.075 14.151 Atomic orbital electron populations 1.21734 0.93574 1.02004 1.01321 1.21370 0.95603 0.94640 0.89877 0.96364 1.19722 0.94108 0.96526 0.94712 1.21351 0.92152 1.34184 1.08711 0.95059 1.25965 0.95515 0.96865 1.00647 1.70067 1.08514 1.46898 1.33542 0.85642 0.79603 0.79368 0.77902 1.19297 1.21191 1.17147 1.60695 1.33764 1.32749 1.04745 1.21946 1.00111 0.93566 0.90702 1.21039 1.00589 0.97492 0.92515 1.22232 1.06784 0.99779 0.89564 1.23100 0.93045 1.03759 1.00823 1.23035 0.96519 1.02497 0.99677 0.92142 0.92246 0.92377 0.95749 0.95839 0.92570 0.84108 0.97300 0.90547 0.90973 0.93145 0.88125 0.88509 0.87731 0.87883 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.42 71.98 0.68 -3.46 16 2 C 0.09 3.84 2.59 44.91 0.12 3.95 16 3 H 0.02 0.79 7.80 -2.38 -0.02 0.77 16 4 C -0.01 -0.62 3.64 29.85 0.11 -0.51 16 5 C -0.53 -30.09 8.67 25.60 0.22 -29.87 16 6 H 0.03 1.97 7.73 -2.91 -0.02 1.95 16 7 C 0.01 0.41 5.47 84.66 0.46 0.88 16 8 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 9 Si 0.95 44.62 27.47 68.60 1.88 46.50 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 13 N -0.69 -26.67 6.31 -491.58 -3.10 -29.77 16 14 C 0.07 2.15 5.44 86.30 0.47 2.62 16 15 C -0.08 -2.21 5.76 30.59 0.18 -2.03 16 16 C -0.16 -3.84 5.74 -10.79 -0.06 -3.90 16 17 C -0.17 -3.22 10.18 30.60 0.31 -2.91 16 18 C -0.18 -3.57 10.25 30.60 0.31 -3.25 16 19 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 20 H 0.06 1.69 7.45 -2.39 -0.02 1.67 16 21 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.02 1.13 7.20 -2.39 -0.02 1.12 16 23 H 0.02 1.10 7.57 -2.38 -0.02 1.08 16 24 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 25 H 0.34 15.04 7.21 -89.69 -0.65 14.39 16 26 H 0.01 0.31 8.06 -2.39 -0.02 0.29 16 27 H 0.08 2.26 7.44 -2.39 -0.02 2.25 16 28 H 0.07 1.97 7.88 -2.39 -0.02 1.95 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.10 2.35 8.07 -2.39 -0.02 2.33 16 31 H 0.10 1.78 8.03 -2.39 -0.02 1.76 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -62.62 277.24 2.22 -60.40 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.34 Total: 20.59 kcal Atomic # 6 Polarization: -41.27 SS G_CDS: 2.80 Total: -38.47 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -2.80 Total: -89.02 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.50 kcal Total: -62.62 2.22 -60.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811438.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.632 kcal (2) G-P(sol) polarization free energy of solvation -62.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds