Wall clock time and date at job start Mon Mar 30 2020 20:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46876 * 2 1 4 4 N 1.46902 * 109.46624 * 119.99305 * 2 1 3 5 5 C 1.46899 * 110.99812 * 205.30798 * 4 2 1 6 6 H 1.09003 * 109.47331 * 323.78084 * 5 4 2 7 7 C 1.53000 * 109.46887 * 83.78215 * 5 4 2 8 8 C 1.53003 * 109.47520 * 203.77931 * 5 4 2 9 9 C 1.50701 * 109.46578 * 64.99934 * 8 5 4 10 10 H 1.08004 * 120.00559 * 0.02562 * 9 8 5 11 11 C 1.37882 * 119.99747 * 180.02562 * 9 8 5 12 12 N 1.31511 * 119.99756 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99975 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46914 * 60.00161 * 13 11 9 15 15 H 1.48504 * 109.47058 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47327 * 300.00179 * 13 11 9 17 17 C 1.52998 * 109.47369 * 239.99373 * 2 1 3 18 18 C 1.52996 * 117.49725 * 128.61916 * 17 2 1 19 19 C 1.52989 * 60.00333 * 252.51374 * 18 17 2 20 20 H 1.08995 * 109.46874 * 174.19516 * 1 2 3 21 21 H 1.08999 * 109.47217 * 294.19540 * 1 2 3 22 22 H 1.08997 * 109.46739 * 54.19742 * 1 2 3 23 23 H 1.00906 * 110.99537 * 81.36007 * 4 2 1 24 24 H 1.09003 * 109.47154 * 294.97848 * 7 5 4 25 25 H 1.08995 * 109.47089 * 54.98135 * 7 5 4 26 26 H 1.09005 * 109.47172 * 174.97983 * 7 5 4 27 27 H 1.08998 * 109.47522 * 185.00053 * 8 5 4 28 28 H 1.08994 * 109.46859 * 305.00902 * 8 5 4 29 29 H 0.97003 * 119.99297 * 179.97438 * 12 11 9 30 30 H 1.08994 * 115.54893 * 274.33579 * 17 2 1 31 31 H 1.09001 * 117.49976 * 0.02562 * 18 17 2 32 32 H 1.09001 * 117.49699 * 145.02230 * 18 17 2 33 33 H 1.08996 * 117.50379 * 252.50902 * 19 18 17 34 34 H 1.09005 * 117.52129 * 107.48298 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 3.3640 -0.2262 1.5646 6 1 3.9366 -0.0235 0.6595 7 6 3.2518 1.0542 2.3946 8 6 4.0728 -1.3055 2.3855 9 6 4.2929 -2.5250 1.5280 10 1 3.9609 -2.5297 0.5002 11 6 4.9181 -3.6349 2.0555 12 7 5.3219 -3.6294 3.3070 13 14 5.1917 -5.1464 0.9924 14 1 6.0316 -4.7835 -0.1773 15 1 5.8795 -6.1941 1.7890 16 1 3.8820 -5.6630 0.5201 17 6 2.0401 -0.7214 -1.2491 18 6 3.0742 0.0050 -2.1116 19 6 1.6359 -0.1497 -2.6095 20 1 -0.3633 -1.0224 -0.1039 21 1 -0.3633 0.4212 0.9374 22 1 -0.3633 0.6012 -0.8335 23 1 2.0067 -1.6930 1.0701 24 1 2.8280 1.8491 1.7808 25 1 2.6055 0.8748 3.2538 26 1 4.2420 1.3510 2.7405 27 1 5.0343 -0.9261 2.7314 28 1 3.4568 -1.5717 3.2444 29 1 5.7615 -4.4104 3.6782 30 1 2.1267 -1.8045 -1.1640 31 1 3.3914 0.9966 -1.7889 32 1 3.8417 -0.6003 -2.5940 33 1 1.4570 -0.8567 -3.4195 34 1 1.0062 0.7400 -2.6146 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695812722.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:37 Heat of formation + Delta-G solvation = 1.317211 kcal Electronic energy + Delta-G solvation = -12967.329263 eV Core-core repulsion = 10900.036986 eV Total energy + Delta-G solvation = -2067.292277 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.29598 -35.51284 -32.78812 -31.34957 -27.69640 -27.33836 -23.39878 -22.65013 -22.05452 -19.71565 -19.35392 -16.29621 -15.68077 -15.20161 -14.49295 -13.99979 -13.46170 -13.19580 -12.50608 -12.10657 -11.98484 -11.74982 -11.43847 -11.25947 -11.09289 -10.93412 -10.65567 -10.57679 -10.52260 -10.17497 -10.09006 -9.62051 -9.17644 -9.01670 -8.36576 -7.55206 -5.99741 -4.02139 3.31661 3.36816 3.38402 4.06677 4.45001 4.87164 4.97710 5.19492 5.30636 5.38573 5.66158 5.72182 5.79392 5.92062 6.02440 6.04920 6.10336 6.26993 6.31179 6.35934 6.37845 6.53120 6.57338 6.69629 6.99019 7.01980 7.60005 7.68695 8.00872 8.13966 8.35508 8.43016 9.04006 9.61452 11.11311 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.030650 B = 0.011152 C = 0.009230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.312840 B = 2510.067474 C = 3032.953019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.112 3.888 3 H 0.067 0.933 4 N -0.675 5.675 5 C 0.087 3.913 6 H 0.032 0.968 7 C -0.136 4.136 8 C 0.021 3.979 9 C -0.520 4.520 10 H 0.052 0.948 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.888 3.112 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.171 4.171 18 C -0.177 4.177 19 C -0.183 4.183 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.047 0.953 23 H 0.354 0.646 24 H 0.033 0.967 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.019 0.981 28 H 0.024 0.976 29 H 0.261 0.739 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 6.705 -7.836 12.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.002 3.998 3 H 0.086 0.914 4 N -0.308 5.308 5 C -0.023 4.023 6 H 0.050 0.950 7 C -0.194 4.194 8 C -0.016 4.016 9 C -0.558 4.558 10 H 0.070 0.930 11 C -0.141 4.141 12 N -0.531 5.531 13 Si 0.716 3.284 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.191 4.191 18 C -0.214 4.214 19 C -0.221 4.221 20 H 0.071 0.929 21 H 0.078 0.922 22 H 0.066 0.934 23 H 0.176 0.824 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.734 7.008 -7.229 12.113 hybrid contribution 0.869 -1.399 -1.327 2.115 sum -5.865 5.610 -8.556 11.793 Atomic orbital electron populations 1.21709 0.95119 1.01457 1.00864 1.21177 0.94738 0.97052 0.86883 0.91438 1.60758 1.25715 1.11544 1.32739 1.21599 0.88085 0.95441 0.97138 0.95014 1.21824 1.00437 0.97088 1.00063 1.19262 0.95136 0.91849 0.95382 1.21149 1.38257 0.98960 0.97470 0.92973 1.24987 0.95719 0.98563 0.94879 1.69953 1.40045 1.29898 1.13217 0.86725 0.78365 0.82867 0.80426 1.20435 1.21312 1.20247 1.23307 1.03221 0.99953 0.92602 1.22923 0.92235 1.01862 1.04419 1.22856 0.98279 1.03094 0.97836 0.92933 0.92242 0.93395 0.82424 0.94757 0.92666 0.93336 0.96231 0.95719 0.92962 0.87782 0.89190 0.89194 0.89456 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.28 37.16 0.34 -1.51 16 2 C 0.11 1.81 2.63 -67.71 -0.18 1.63 16 3 H 0.07 1.09 6.83 -51.93 -0.35 0.74 16 4 N -0.67 -13.09 6.05 -99.73 -0.60 -13.69 16 5 C 0.09 1.82 2.42 -67.71 -0.16 1.66 16 6 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 7 C -0.14 -2.51 9.36 37.16 0.35 -2.16 16 8 C 0.02 0.54 4.58 -27.88 -0.13 0.41 16 9 C -0.52 -14.30 8.12 -34.44 -0.28 -14.58 16 10 H 0.05 1.39 7.47 -52.48 -0.39 1.00 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 13 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 C -0.17 -2.68 4.99 -90.62 -0.45 -3.13 16 18 C -0.18 -2.60 10.18 -26.74 -0.27 -2.87 16 19 C -0.18 -2.37 9.80 -26.74 -0.26 -2.63 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.05 0.57 7.50 -51.93 -0.39 0.18 16 23 H 0.35 7.50 6.80 -39.29 -0.27 7.23 16 24 H 0.03 0.56 7.41 -51.93 -0.39 0.17 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.10 1.80 7.92 -51.93 -0.41 1.39 16 31 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 32 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.06 7.67 -51.93 -0.40 0.66 16 LS Contribution 277.78 15.07 4.19 4.19 Total: -1.00 -28.49 277.78 -7.77 -36.26 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.93 Total: 4.24 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -1.14 Total: -21.57 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.13 Total: -39.64 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.49 -7.77 -36.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812722.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.579 kcal (2) G-P(sol) polarization free energy of solvation -28.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds