Wall clock time and date at job start Mon Mar 30 2020 20:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47434 * 2 1 4 4 C 1.53001 * 109.46785 * 119.99776 * 2 1 3 5 5 C 1.50698 * 109.47034 * 184.99810 * 4 2 1 6 6 H 1.08001 * 120.00089 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00201 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00008 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00236 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47235 * 90.00149 * 9 7 5 11 11 H 1.48504 * 109.47153 * 210.00386 * 9 7 5 12 12 H 1.48511 * 109.47055 * 330.00187 * 9 7 5 13 13 N 1.46903 * 109.47097 * 239.99567 * 2 1 3 14 14 C 1.46895 * 110.99790 * 85.00342 * 13 2 1 15 15 C 1.52999 * 109.47056 * 179.97438 * 14 13 2 16 16 C 1.53786 * 113.61361 * 184.99739 * 15 14 13 17 17 C 1.53781 * 87.17350 * 220.06273 * 16 15 14 18 18 C 1.53782 * 87.08260 * 25.39213 * 17 16 15 19 19 H 1.09003 * 109.47167 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46607 * 300.00063 * 1 2 3 21 21 H 1.08993 * 109.46717 * 60.00202 * 1 2 3 22 22 H 1.08994 * 109.47489 * 305.00108 * 4 2 1 23 23 H 1.08999 * 109.47576 * 65.00282 * 4 2 1 24 24 H 0.96995 * 119.99775 * 179.97438 * 8 7 5 25 25 H 1.00897 * 110.99907 * 208.95524 * 13 2 1 26 26 H 1.09002 * 109.47616 * 59.99626 * 14 13 2 27 27 H 1.09004 * 109.47026 * 299.99702 * 14 13 2 28 28 H 1.08993 * 112.90825 * 316.24939 * 15 14 13 29 29 H 1.09002 * 113.61357 * 105.47190 * 16 15 14 30 30 H 1.09002 * 113.61608 * 334.65352 * 16 15 14 31 31 H 1.09001 * 113.61695 * 139.93969 * 17 16 15 32 32 H 1.08997 * 113.61223 * 270.84552 * 17 16 15 33 33 H 1.08997 * 113.61668 * 89.11298 * 18 17 16 34 34 H 1.08998 * 113.61674 * 219.93807 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0789 -0.0856 0.5397 7 6 4.2303 -1.1926 2.3585 8 7 3.5763 -1.8369 3.3002 9 14 6.0919 -1.0603 2.4376 10 1 6.4697 0.1624 3.1908 11 1 6.6444 -2.2554 3.1245 12 1 6.6416 -0.9828 1.0601 13 7 2.0197 -0.6926 -1.1994 14 6 2.0826 0.2224 -2.3468 15 6 2.5963 -0.5331 -3.5741 16 6 2.8155 0.3649 -4.8031 17 6 2.2311 -0.7792 -5.6484 18 6 1.4852 -1.2292 -4.3811 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3632 0.5139 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 1.6054 -0.2617 2.1370 23 1 1.7517 -1.7715 1.2057 24 1 4.0606 -2.2436 4.0356 25 1 2.9173 -1.1206 -1.0287 26 1 2.7589 1.0461 -2.1182 27 1 1.0871 0.6161 -2.5525 28 1 3.4439 -1.1805 -3.3496 29 1 3.8654 0.5701 -5.0123 30 1 2.2005 1.2648 -4.8017 31 1 1.5707 -0.4394 -6.4462 32 1 2.9788 -1.4940 -5.9920 33 1 0.5059 -0.7656 -4.2630 34 1 1.4600 -2.3110 -4.2503 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814180.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:46 Heat of formation + Delta-G solvation = -22.940167 kcal Electronic energy + Delta-G solvation = -12631.715404 eV Core-core repulsion = 10563.371249 eV Total energy + Delta-G solvation = -2068.344156 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.85701 -37.79171 -34.78261 -32.25339 -29.30768 -27.62146 -26.36536 -25.07651 -22.95002 -21.21988 -20.09635 -18.52690 -16.84293 -16.68001 -16.21226 -15.82503 -15.37745 -14.65052 -14.20414 -13.59667 -13.52164 -13.27259 -13.23397 -12.75855 -12.71484 -12.56795 -12.49297 -12.33200 -11.92008 -11.49606 -11.30434 -11.08355 -10.99600 -10.81322 -10.58464 -9.14143 -8.20550 -6.31405 1.38650 1.39349 1.50194 2.39221 3.10583 3.40156 3.82223 3.89418 3.99078 4.13666 4.29400 4.51771 4.62000 4.67230 4.72919 4.82428 4.92144 4.93880 4.98273 5.08333 5.14119 5.20901 5.22506 5.32682 5.42762 5.50824 5.55765 5.69215 5.83079 6.20039 6.45084 6.66776 6.83705 7.37369 8.91194 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.036273 B = 0.008405 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.739609 B = 3330.516976 C = 3876.538832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.093 3.907 3 H 0.021 0.979 4 C 0.027 3.973 5 C -0.535 4.535 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.962 3.038 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.263 1.263 13 N -0.684 5.684 14 C 0.072 3.928 15 C -0.114 4.114 16 C -0.132 4.132 17 C -0.134 4.134 18 C -0.127 4.127 19 H 0.049 0.951 20 H 0.052 0.948 21 H 0.061 0.939 22 H -0.006 1.006 23 H -0.003 1.003 24 H 0.263 0.737 25 H 0.340 0.660 26 H 0.013 0.987 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 3.729 -14.870 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.016 4.016 3 H 0.039 0.961 4 C -0.011 4.011 5 C -0.573 4.573 6 H 0.074 0.926 7 C -0.195 4.195 8 N -0.570 5.570 9 Si 0.787 3.213 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.188 1.188 13 N -0.316 5.316 14 C -0.057 4.057 15 C -0.133 4.133 16 C -0.170 4.170 17 C -0.171 4.171 18 C -0.165 4.165 19 H 0.068 0.932 20 H 0.071 0.929 21 H 0.080 0.920 22 H 0.013 0.987 23 H 0.015 0.985 24 H 0.072 0.928 25 H 0.159 0.841 26 H 0.032 0.968 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.757 3.389 -14.881 15.509 hybrid contribution 1.652 0.389 0.974 1.957 sum -1.105 3.778 -13.907 14.453 Atomic orbital electron populations 1.21698 0.94482 1.01391 1.00861 1.21442 0.95176 0.94654 0.90362 0.96084 1.19144 0.94895 0.94721 0.92297 1.21513 0.93286 1.34184 1.08349 0.92617 1.25913 1.03496 0.94750 0.95297 1.70096 1.37615 1.36649 1.12686 0.85498 0.79595 0.77640 0.78608 1.20048 1.20781 1.18758 1.60613 1.33750 1.32824 1.04442 1.22014 0.99720 0.93391 0.90604 1.22590 0.99119 0.98440 0.93174 1.22924 1.01473 0.97594 0.94973 1.22789 0.99870 0.98001 0.96452 1.22889 0.97643 1.00116 0.95802 0.93223 0.92933 0.92042 0.98720 0.98458 0.92780 0.84090 0.96843 0.90959 0.90526 0.91336 0.89576 0.90275 0.89946 0.90168 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.42 71.98 0.68 -3.91 16 2 C 0.09 4.01 2.59 44.92 0.12 4.12 16 3 H 0.02 0.93 7.80 -2.39 -0.02 0.91 16 4 C 0.03 1.44 4.57 29.85 0.14 1.57 16 5 C -0.54 -30.23 8.12 25.60 0.21 -30.02 16 6 H 0.06 3.03 7.49 -2.91 -0.02 3.01 16 7 C 0.00 0.21 5.46 84.65 0.46 0.67 16 8 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 9 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 13 N -0.68 -26.90 6.31 -491.57 -3.10 -30.01 16 14 C 0.07 2.28 5.32 86.30 0.46 2.74 16 15 C -0.11 -3.07 3.91 -10.20 -0.04 -3.11 16 16 C -0.13 -2.77 7.64 31.12 0.24 -2.53 16 17 C -0.13 -2.54 8.08 31.12 0.25 -2.28 16 18 C -0.13 -2.99 7.64 31.18 0.24 -2.76 16 19 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 20 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 21 H 0.06 1.90 7.45 -2.39 -0.02 1.89 16 22 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 23 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 24 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 25 H 0.34 14.76 7.20 -89.70 -0.65 14.12 16 26 H 0.01 0.45 8.06 -2.39 -0.02 0.43 16 27 H 0.07 2.14 7.14 -2.38 -0.02 2.12 16 28 H 0.08 2.23 8.13 -2.39 -0.02 2.21 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.68 8.10 -2.39 -0.02 1.66 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.84 7.90 -2.39 -0.02 1.83 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -61.52 275.92 2.35 -59.17 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.40 Total: 16.53 kcal Atomic # 6 Polarization: -38.25 SS G_CDS: 2.75 Total: -35.50 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -2.82 Total: -86.58 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -61.52 2.35 -59.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814180.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.227 kcal (2) G-P(sol) polarization free energy of solvation -61.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds