Wall clock time and date at job start Mon Mar 30 2020 20:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47430 * 2 1 4 4 C 1.53002 * 109.47389 * 239.99797 * 2 1 3 5 5 C 1.50698 * 109.47221 * 172.96311 * 4 2 1 6 6 H 1.07998 * 119.99892 * 355.35895 * 5 4 2 7 7 C 1.37879 * 119.99638 * 175.08130 * 5 4 2 8 8 N 1.31521 * 119.99649 * 180.27336 * 7 5 4 9 9 Si 1.86796 * 120.00198 * 0.27747 * 7 5 4 10 10 H 1.48494 * 109.47311 * 90.00037 * 9 7 5 11 11 H 1.48508 * 109.46909 * 209.99929 * 9 7 5 12 12 H 1.48500 * 109.47171 * 329.99328 * 9 7 5 13 13 N 1.46906 * 109.46851 * 119.99855 * 2 1 3 14 14 C 1.47481 * 110.99955 * 194.51799 * 13 2 1 15 15 C 1.53512 * 87.93112 * 138.70468 * 14 13 2 16 16 C 1.47477 * 110.99947 * 290.49017 * 13 2 1 17 17 C 1.52995 * 113.47896 * 336.06078 * 16 13 2 18 18 C 1.52998 * 113.47537 * 106.53115 * 16 13 2 19 19 H 1.09005 * 109.46879 * 54.63274 * 1 2 3 20 20 H 1.08995 * 109.47295 * 174.63331 * 1 2 3 21 21 H 1.09002 * 109.47311 * 294.63601 * 1 2 3 22 22 H 1.09003 * 109.46950 * 52.95815 * 4 2 1 23 23 H 1.09007 * 109.46843 * 292.96287 * 4 2 1 24 24 H 0.96999 * 119.99866 * 180.02562 * 8 7 5 25 25 H 1.09001 * 113.47434 * 253.47164 * 14 13 2 26 26 H 1.08995 * 113.47679 * 23.94064 * 14 13 2 27 27 H 1.09004 * 114.17305 * 87.62375 * 15 14 13 28 28 H 1.08998 * 114.16980 * 220.32546 * 15 14 13 29 29 H 1.09003 * 109.46969 * 66.03021 * 17 16 13 30 30 H 1.08994 * 109.47638 * 186.02830 * 17 16 13 31 31 H 1.09005 * 109.47277 * 306.03485 * 17 16 13 32 32 H 1.09002 * 109.47548 * 60.00074 * 18 16 13 33 33 H 1.09001 * 109.47245 * 179.97438 * 18 16 13 34 34 H 1.08999 * 109.47300 * 299.99405 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5369 -0.5723 -1.3393 6 1 4.0623 0.0433 -0.6242 7 6 4.2363 -1.2265 -2.3312 8 7 5.5433 -1.1008 -2.4066 9 14 3.3276 -2.2913 -3.5680 10 1 2.9317 -1.4647 -4.7364 11 1 4.2151 -3.3932 -4.0192 12 1 2.1135 -2.8627 -2.9317 13 7 2.0196 -0.6925 1.1995 14 6 3.4524 -0.4206 1.4189 15 6 3.1409 -0.2879 2.9162 16 6 1.7414 0.0950 2.4150 17 6 1.5785 1.5925 2.1471 18 6 0.6097 -0.4809 3.2685 19 1 -0.3633 0.5949 -0.8381 20 1 -0.3633 -1.0231 -0.0961 21 1 -0.3634 0.4284 0.9341 22 1 1.5775 -0.2854 -2.1348 23 1 1.7832 -1.7789 -1.1884 24 1 6.0354 -1.5608 -3.1046 25 1 4.0963 -1.2679 1.1827 26 1 3.7930 0.5086 0.9622 27 1 3.1766 -1.2292 3.4647 28 1 3.6744 0.5226 3.4129 29 1 0.6847 1.7589 1.5457 30 1 1.4827 2.1228 3.0944 31 1 2.4518 1.9626 1.6100 32 1 0.8715 -1.4901 3.5862 33 1 0.4599 0.1484 4.1459 34 1 -0.3085 -0.5113 2.6819 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695904119.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:57 Heat of formation + Delta-G solvation = 10.399125 kcal Electronic energy + Delta-G solvation = -13490.355665 eV Core-core repulsion = 11423.457210 eV Total energy + Delta-G solvation = -2066.898456 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.79175 -35.92426 -34.09797 -32.13876 -29.89117 -28.33289 -27.76020 -24.63932 -23.68771 -21.26562 -19.23754 -18.52947 -16.92757 -16.58328 -16.10683 -15.87810 -14.80522 -14.63067 -13.99044 -13.84079 -13.67761 -13.21449 -13.18634 -12.85232 -12.71909 -12.56913 -12.38509 -12.28189 -12.11128 -11.80478 -11.51056 -11.04723 -10.92422 -10.81044 -10.63189 -9.49314 -8.22834 -6.22962 1.32272 1.35311 1.46583 2.38140 3.08123 3.24010 3.63851 3.94534 4.23270 4.26102 4.29596 4.40150 4.57111 4.62439 4.74422 4.85810 4.87442 4.94943 5.02294 5.06499 5.10283 5.12644 5.16998 5.26796 5.33166 5.42284 5.53200 5.60907 5.68387 5.83607 6.35556 6.49777 6.82348 7.39186 8.91942 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.046857 B = 0.011567 C = 0.010293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.422185 B = 2420.043522 C = 2719.767353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.058 3.942 3 H 0.038 0.962 4 C -0.007 4.007 5 C -0.517 4.517 6 H 0.058 0.942 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.938 3.062 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.255 1.255 13 N -0.467 5.467 14 C 0.025 3.975 15 C -0.136 4.136 16 C 0.046 3.954 17 C -0.155 4.155 18 C -0.119 4.119 19 H 0.061 0.939 20 H 0.051 0.949 21 H 0.073 0.927 22 H 0.015 0.985 23 H 0.014 0.986 24 H 0.262 0.738 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.488 3.085 10.041 14.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.051 4.051 3 H 0.056 0.944 4 C -0.045 4.045 5 C -0.555 4.555 6 H 0.076 0.924 7 C -0.190 4.190 8 N -0.593 5.593 9 Si 0.763 3.237 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.179 1.179 13 N -0.190 5.190 14 C -0.104 4.104 15 C -0.173 4.173 16 C -0.045 4.045 17 C -0.213 4.213 18 C -0.176 4.176 19 H 0.080 0.920 20 H 0.070 0.930 21 H 0.092 0.908 22 H 0.033 0.967 23 H 0.032 0.968 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.629 2.343 9.828 14.665 hybrid contribution 0.704 0.234 -1.198 1.409 sum -9.925 2.578 8.630 13.402 Atomic orbital electron populations 1.21903 0.93516 1.01880 1.02225 1.21989 0.95660 0.95708 0.91756 0.94359 1.19589 0.94785 0.96046 0.94066 1.21729 0.92361 1.28218 1.13154 0.92357 1.25848 0.95400 0.98023 0.99745 1.70051 1.08040 1.45825 1.35342 0.85833 0.79218 0.79009 0.79597 1.19464 1.21417 1.17931 1.68975 1.05776 1.42838 1.01459 1.23377 0.92220 0.99406 0.95377 1.23396 0.96199 1.02438 0.95285 1.22745 0.96198 0.93184 0.92332 1.22106 1.01857 0.94411 1.02912 1.21621 0.96531 1.00794 0.98687 0.92002 0.92958 0.90796 0.96676 0.96796 0.92934 0.93466 0.93207 0.88856 0.89768 0.91130 0.89679 0.94083 0.92631 0.90388 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 8.65 71.98 0.62 -3.75 16 2 C 0.06 2.32 1.56 44.91 0.07 2.39 16 3 H 0.04 1.59 5.61 -2.39 -0.01 1.58 16 4 C -0.01 -0.35 3.73 29.85 0.11 -0.24 16 5 C -0.52 -29.71 8.28 25.60 0.21 -29.49 16 6 H 0.06 3.57 5.03 -2.91 -0.01 3.55 16 7 C 0.01 0.35 5.47 84.65 0.46 0.81 16 8 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 9 Si 0.94 46.19 27.57 68.60 1.89 48.08 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 12 H -0.26 -12.05 6.41 99.48 0.64 -11.41 16 13 N -0.47 -18.08 5.92 -852.15 -5.04 -23.12 16 14 C 0.03 1.05 5.03 83.58 0.42 1.47 16 15 C -0.14 -4.11 7.59 30.94 0.23 -3.87 16 16 C 0.05 1.34 0.80 0.80 0.00 1.34 16 17 C -0.15 -4.09 7.46 71.98 0.54 -3.55 16 18 C -0.12 -2.80 9.33 71.98 0.67 -2.13 16 19 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 20 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.07 1.98 4.52 -2.39 -0.01 1.97 16 22 H 0.02 0.72 7.80 -2.39 -0.02 0.70 16 23 H 0.01 0.70 6.86 -2.38 -0.02 0.68 16 24 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 25 H 0.05 2.26 7.93 -2.39 -0.02 2.24 16 26 H 0.05 2.26 5.30 -2.39 -0.01 2.24 16 27 H 0.09 2.66 8.00 -2.38 -0.02 2.64 16 28 H 0.08 2.22 8.11 -2.39 -0.02 2.20 16 29 H 0.07 1.80 5.50 -2.39 -0.01 1.79 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.04 1.25 6.34 -2.38 -0.02 1.23 16 32 H 0.05 1.35 7.97 -2.39 -0.02 1.33 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.34 6.66 -2.39 -0.02 1.32 16 Total: -1.00 -65.33 252.48 1.49 -63.85 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.00 Total: 8.23 kcal Atomic # 6 Polarization: -40.38 SS G_CDS: 3.34 Total: -37.03 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -4.74 Total: -83.12 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.89 Total: 48.08 kcal Total: -65.33 1.49 -63.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695904119.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.245 kcal (2) G-P(sol) polarization free energy of solvation -65.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds