Wall clock time and date at job start Mon Mar 30 2020 20:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46994 * 2 1 4 4 N 1.46906 * 109.46753 * 119.99897 * 2 1 3 5 5 C 1.46901 * 111.00198 * 85.00278 * 4 2 1 6 6 H 1.08993 * 109.40895 * 324.85543 * 5 4 2 7 7 C 1.52955 * 109.35598 * 84.68100 * 5 4 2 8 8 C 1.53661 * 109.32473 * 183.79878 * 7 5 4 9 9 C 1.51270 * 108.30723 * 305.14049 * 8 7 5 10 10 C 1.37879 * 120.84356 * 231.37849 * 9 8 7 11 11 N 1.31514 * 119.99350 * 180.28098 * 10 9 8 12 12 Si 1.86798 * 120.00608 * 0.28149 * 10 9 8 13 13 H 1.48493 * 109.47326 * 270.00340 * 12 10 9 14 14 H 1.48506 * 109.46545 * 30.00090 * 12 10 9 15 15 H 1.48498 * 109.47210 * 149.99801 * 12 10 9 16 16 C 1.51265 * 118.30026 * 51.65651 * 9 8 7 17 17 C 1.52959 * 109.41042 * 204.99869 * 5 4 2 18 18 H 1.09005 * 109.46949 * 60.00571 * 1 2 3 19 19 H 1.09007 * 109.47165 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47448 * 300.00276 * 1 2 3 21 21 H 1.08999 * 109.47448 * 239.99724 * 2 1 3 22 22 H 1.09004 * 109.46502 * 179.97438 * 3 2 1 23 23 H 1.08993 * 109.47176 * 299.99745 * 3 2 1 24 24 H 1.09004 * 109.46857 * 59.99838 * 3 2 1 25 25 H 1.00902 * 110.99962 * 321.04297 * 4 2 1 26 26 H 1.09005 * 109.48318 * 303.65229 * 7 5 4 27 27 H 1.09000 * 109.48301 * 63.67457 * 7 5 4 28 28 H 1.08998 * 109.68928 * 185.52122 * 8 7 5 29 29 H 1.09001 * 109.78021 * 64.81103 * 8 7 5 30 30 H 0.97005 * 119.99661 * 179.97438 * 11 10 9 31 31 H 1.08996 * 109.62656 * 68.11897 * 16 9 8 32 32 H 1.09005 * 109.62271 * 188.68416 * 16 9 8 33 33 H 1.09003 * 109.48108 * 56.38926 * 17 5 4 34 34 H 1.08995 * 109.49355 * 296.34956 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 -2.1438 0.9808 6 1 1.2558 -2.4496 0.3396 7 6 3.4081 -2.4977 0.3050 8 6 3.4330 -4.0015 -0.0096 9 6 3.1653 -4.7595 1.2718 10 6 4.0037 -5.7749 1.6808 11 7 3.7521 -6.4266 2.7950 12 14 5.4968 -6.2248 0.6524 13 1 5.1215 -7.2685 -0.3350 14 1 5.9862 -5.0192 -0.0634 15 1 6.5697 -6.7442 1.5381 16 6 1.9510 -4.3794 2.0896 17 6 1.9768 -2.8655 2.3253 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 1.8934 -0.5139 -0.8899 22 1 3.1300 1.4424 0.0005 23 1 1.6767 1.9563 -0.8899 24 1 1.6765 1.9563 0.8900 25 1 1.4494 -0.4721 2.0023 26 1 3.5063 -1.9319 -0.6216 27 1 4.2338 -2.2492 0.9717 28 1 4.4116 -4.2786 -0.4014 29 1 2.6617 -4.2378 -0.7427 30 1 4.3417 -7.1412 3.0826 31 1 1.0450 -4.6502 1.5474 32 1 1.9771 -4.8994 3.0472 33 1 1.0604 -2.5606 2.8306 34 1 2.8362 -2.6086 2.9445 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885288115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:35 Heat of formation + Delta-G solvation = -28.309357 kcal Electronic energy + Delta-G solvation = -13124.010249 eV Core-core repulsion = 11055.433268 eV Total energy + Delta-G solvation = -2068.576981 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.97413 -35.29564 -32.28003 -30.03933 -29.31239 -26.97794 -26.12822 -21.93954 -21.38216 -20.08377 -19.08046 -16.07539 -15.33615 -14.64280 -14.41590 -13.58803 -13.44978 -12.95314 -12.65124 -12.35812 -12.12668 -12.05009 -11.78720 -11.27928 -11.01206 -10.91766 -10.68819 -10.54300 -10.26240 -10.03615 -9.89847 -9.40449 -8.83302 -8.56148 -8.40780 -7.83336 -6.04635 -3.94571 3.30963 3.39093 3.40612 4.43171 4.62441 5.10745 5.23535 5.32601 5.51687 5.72654 5.85717 5.88099 5.93807 6.06615 6.06972 6.29653 6.32478 6.47341 6.63119 6.76493 6.86631 6.96079 7.03358 7.12883 7.18840 7.52190 7.66859 7.75254 7.80709 7.90539 7.98134 8.45570 9.02814 9.60384 11.05213 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.056158 B = 0.009587 C = 0.008749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.470730 B = 2920.036972 C = 3199.489630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.076 3.924 3 C -0.136 4.136 4 N -0.687 5.687 5 C 0.100 3.900 6 H 0.031 0.969 7 C -0.090 4.090 8 C -0.023 4.023 9 C -0.483 4.483 10 C 0.073 3.927 11 N -0.893 5.893 12 Si 0.887 3.113 13 H -0.279 1.279 14 H -0.264 1.264 15 H -0.290 1.290 16 C 0.011 3.989 17 C -0.108 4.108 18 H 0.054 0.946 19 H 0.054 0.946 20 H 0.053 0.947 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.332 0.668 26 H 0.027 0.973 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.013 0.987 30 H 0.263 0.737 31 H 0.000 1.000 32 H 0.057 0.943 33 H 0.025 0.975 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 10.260 -4.324 11.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.035 4.035 3 C -0.194 4.194 4 N -0.317 5.317 5 C -0.009 4.009 6 H 0.049 0.951 7 C -0.129 4.129 8 C -0.061 4.061 9 C -0.502 4.502 10 C -0.129 4.129 11 N -0.531 5.531 12 Si 0.715 3.285 13 H -0.205 1.205 14 H -0.189 1.189 15 H -0.217 1.217 16 C -0.027 4.027 17 C -0.146 4.146 18 H 0.073 0.927 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.093 0.907 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.150 0.850 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.019 0.981 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.823 10.213 -4.348 11.454 hybrid contribution -0.186 -0.521 -0.450 0.713 sum -3.009 9.693 -4.798 11.226 Atomic orbital electron populations 1.22511 0.98003 1.01815 1.01600 1.21558 0.91995 0.95217 0.94698 1.21753 1.01658 0.95419 1.00601 1.60762 1.56580 1.09673 1.04703 1.21441 0.97340 0.84442 0.97631 0.95109 1.21600 0.96335 0.97546 0.97378 1.19929 0.97002 0.92366 0.96799 1.20058 1.09355 1.15594 1.05221 1.24857 0.97514 0.95598 0.94889 1.69844 1.38379 1.22897 1.21996 0.86675 0.82962 0.78636 0.80182 1.20545 1.18906 1.21682 1.19360 0.94844 0.89925 0.98566 1.21799 0.98633 0.99547 0.94646 0.92686 0.92679 0.92818 0.90690 0.92188 0.93202 0.93125 0.84992 0.95458 0.92602 0.94792 0.96858 0.92699 0.98113 0.92438 0.95625 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 9.15 37.16 0.34 -1.94 16 2 C 0.08 1.08 3.00 -67.71 -0.20 0.88 16 3 C -0.14 -1.67 9.52 37.16 0.35 -1.32 16 4 N -0.69 -11.51 6.05 -99.78 -0.60 -12.11 16 5 C 0.10 1.99 2.21 -67.76 -0.15 1.84 16 6 H 0.03 0.63 7.11 -51.93 -0.37 0.26 16 7 C -0.09 -1.94 5.44 -26.41 -0.14 -2.08 16 8 C -0.02 -0.55 5.62 -27.26 -0.15 -0.71 16 9 C -0.48 -13.04 5.50 -98.92 -0.54 -13.58 16 10 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 11 N -0.89 -26.19 12.73 55.43 0.71 -25.49 16 12 Si 0.89 21.52 27.52 -169.99 -4.68 16.84 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.26 -6.21 6.11 56.52 0.35 -5.86 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 16 C 0.01 0.28 5.97 -27.49 -0.16 0.11 16 17 C -0.11 -2.35 5.24 -26.63 -0.14 -2.49 16 18 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 19 H 0.05 0.76 7.42 -51.93 -0.39 0.38 16 20 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 21 H 0.07 1.16 7.07 -51.93 -0.37 0.79 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.33 5.21 8.04 -39.29 -0.32 4.89 16 26 H 0.03 0.53 7.35 -51.93 -0.38 0.15 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.03 0.81 4.60 -51.93 -0.24 0.57 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 33 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 262.03 15.07 3.95 3.95 Total: -1.00 -28.00 262.03 -7.37 -35.37 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -5.84 Total: -1.23 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -0.90 Total: -17.33 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.10 Total: -37.60 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.68 Total: 16.84 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.00 -7.37 -35.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885288115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.061 kcal (2) G-P(sol) polarization free energy of solvation -28.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds