Wall clock time and date at job start Mon Mar 30 2020 20:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46994 * 2 1 4 4 N 1.46906 * 109.46753 * 119.99897 * 2 1 3 5 5 C 1.46901 * 111.00198 * 85.00278 * 4 2 1 6 6 H 1.08993 * 109.40895 * 324.85543 * 5 4 2 7 7 C 1.52955 * 109.35598 * 84.68100 * 5 4 2 8 8 C 1.53661 * 109.32473 * 183.79878 * 7 5 4 9 9 C 1.51270 * 108.30723 * 305.14049 * 8 7 5 10 10 C 1.37879 * 120.84356 * 231.37849 * 9 8 7 11 11 N 1.31514 * 119.99350 * 180.28098 * 10 9 8 12 12 Si 1.86798 * 120.00608 * 0.28149 * 10 9 8 13 13 H 1.48493 * 109.47326 * 270.00340 * 12 10 9 14 14 H 1.48506 * 109.46545 * 30.00090 * 12 10 9 15 15 H 1.48498 * 109.47210 * 149.99801 * 12 10 9 16 16 C 1.51265 * 118.30026 * 51.65651 * 9 8 7 17 17 C 1.52959 * 109.41042 * 204.99869 * 5 4 2 18 18 H 1.09005 * 109.46949 * 60.00571 * 1 2 3 19 19 H 1.09007 * 109.47165 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47448 * 300.00276 * 1 2 3 21 21 H 1.08999 * 109.47448 * 239.99724 * 2 1 3 22 22 H 1.09004 * 109.46502 * 179.97438 * 3 2 1 23 23 H 1.08993 * 109.47176 * 299.99745 * 3 2 1 24 24 H 1.09004 * 109.46857 * 59.99838 * 3 2 1 25 25 H 1.00902 * 110.99962 * 321.04297 * 4 2 1 26 26 H 1.09005 * 109.48318 * 303.65229 * 7 5 4 27 27 H 1.09000 * 109.48301 * 63.67457 * 7 5 4 28 28 H 1.08998 * 109.68928 * 185.52122 * 8 7 5 29 29 H 1.09001 * 109.78021 * 64.81103 * 8 7 5 30 30 H 0.97005 * 119.99661 * 179.97438 * 11 10 9 31 31 H 1.08996 * 109.62656 * 68.11897 * 16 9 8 32 32 H 1.09005 * 109.62271 * 188.68416 * 16 9 8 33 33 H 1.09003 * 109.48108 * 56.38926 * 17 5 4 34 34 H 1.08995 * 109.49355 * 296.34956 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 -2.1438 0.9808 6 1 1.2558 -2.4496 0.3396 7 6 3.4081 -2.4977 0.3050 8 6 3.4330 -4.0015 -0.0096 9 6 3.1653 -4.7595 1.2718 10 6 4.0037 -5.7749 1.6808 11 7 3.7521 -6.4266 2.7950 12 14 5.4968 -6.2248 0.6524 13 1 5.1215 -7.2685 -0.3350 14 1 5.9862 -5.0192 -0.0634 15 1 6.5697 -6.7442 1.5381 16 6 1.9510 -4.3794 2.0896 17 6 1.9768 -2.8655 2.3253 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 1.8934 -0.5139 -0.8899 22 1 3.1300 1.4424 0.0005 23 1 1.6767 1.9563 -0.8899 24 1 1.6765 1.9563 0.8900 25 1 1.4494 -0.4721 2.0023 26 1 3.5063 -1.9319 -0.6216 27 1 4.2338 -2.2492 0.9717 28 1 4.4116 -4.2786 -0.4014 29 1 2.6617 -4.2378 -0.7427 30 1 4.3417 -7.1412 3.0826 31 1 1.0450 -4.6502 1.5474 32 1 1.9771 -4.8994 3.0472 33 1 1.0604 -2.5606 2.8306 34 1 2.8362 -2.6086 2.9445 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885288115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:35 Heat of formation + Delta-G solvation = -45.765382 kcal Electronic energy + Delta-G solvation = -13124.767199 eV Core-core repulsion = 11055.433268 eV Total energy + Delta-G solvation = -2069.333932 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.51456 -36.85691 -34.14235 -31.75229 -31.08054 -27.94918 -27.86001 -23.72715 -23.26059 -21.33871 -20.85878 -18.03854 -16.73417 -16.40304 -15.88839 -15.23461 -14.77274 -14.53776 -14.44061 -13.98101 -13.80965 -13.36574 -13.05289 -12.81442 -12.73369 -12.52525 -12.11674 -12.03650 -11.89490 -11.78253 -11.56987 -11.30784 -10.76267 -10.54450 -10.44049 -9.19871 -8.16157 -6.09869 1.38490 1.40986 1.49739 2.41517 3.07216 3.37252 4.03091 4.15700 4.25640 4.33433 4.47913 4.60712 4.77902 4.80806 4.94250 4.96192 4.98212 5.04327 5.06527 5.15864 5.25967 5.27016 5.33214 5.37283 5.49912 5.63162 5.63956 5.77447 5.90088 6.32502 6.37800 6.65968 6.96375 7.47669 8.95044 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.056158 B = 0.009587 C = 0.008749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.470730 B = 2920.036972 C = 3199.489630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.071 3.929 3 C -0.130 4.130 4 N -0.688 5.688 5 C 0.112 3.888 6 H 0.028 0.972 7 C -0.085 4.085 8 C -0.025 4.025 9 C -0.496 4.496 10 C 0.017 3.983 11 N -0.935 5.935 12 Si 0.941 3.059 13 H -0.274 1.274 14 H -0.250 1.250 15 H -0.292 1.292 16 C 0.007 3.993 17 C -0.098 4.098 18 H 0.073 0.927 19 H 0.039 0.961 20 H 0.063 0.937 21 H 0.064 0.936 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.340 0.660 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.035 0.965 29 H 0.018 0.982 30 H 0.262 0.738 31 H -0.003 1.003 32 H 0.025 0.975 33 H 0.048 0.952 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.705 12.162 -5.700 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.038 4.038 3 C -0.188 4.188 4 N -0.319 5.319 5 C 0.003 3.997 6 H 0.046 0.954 7 C -0.123 4.123 8 C -0.063 4.063 9 C -0.516 4.516 10 C -0.181 4.181 11 N -0.575 5.575 12 Si 0.768 3.232 13 H -0.200 1.200 14 H -0.174 1.174 15 H -0.219 1.219 16 C -0.031 4.031 17 C -0.136 4.136 18 H 0.092 0.908 19 H 0.058 0.942 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.159 0.841 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.015 0.985 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.979 12.141 -5.741 13.757 hybrid contribution -0.221 -1.082 -0.014 1.104 sum -3.200 11.060 -5.755 12.872 Atomic orbital electron populations 1.22436 0.96526 1.01281 1.03099 1.21673 0.93245 0.95964 0.92944 1.21696 1.01013 0.94048 1.02038 1.60681 1.57541 1.07478 1.06227 1.21147 0.96329 0.86377 0.95881 0.95379 1.21490 0.96722 0.95903 0.98231 1.19947 0.97131 0.93810 0.95376 1.20683 1.09276 1.15351 1.06271 1.25662 1.00495 0.95908 0.96005 1.69984 1.39712 1.23904 1.23899 0.85790 0.79760 0.78844 0.78833 1.19966 1.17405 1.21856 1.19334 0.94513 0.92509 0.96783 1.21604 0.99067 0.96926 0.95991 0.90804 0.94189 0.91767 0.91796 0.93154 0.91108 0.92374 0.84089 0.93305 0.94030 0.94697 0.96324 0.92891 0.98460 0.95662 0.93363 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 9.15 71.98 0.66 -3.20 16 2 C 0.07 1.84 3.00 44.91 0.13 1.97 16 3 C -0.13 -2.75 9.52 71.98 0.69 -2.07 16 4 N -0.69 -21.40 6.05 -469.61 -2.84 -24.25 16 5 C 0.11 4.26 2.21 44.89 0.10 4.36 16 6 H 0.03 1.10 7.11 -2.39 -0.02 1.08 16 7 C -0.08 -3.51 5.44 30.80 0.17 -3.34 16 8 C -0.02 -1.15 5.62 30.25 0.17 -0.98 16 9 C -0.50 -26.90 5.50 -16.17 -0.09 -26.99 16 10 C 0.02 0.95 5.46 84.66 0.46 1.41 16 11 N -0.93 -56.32 12.73 21.45 0.27 -56.04 16 12 Si 0.94 44.18 27.52 68.60 1.89 46.07 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.25 -11.03 6.11 99.48 0.61 -10.42 16 15 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 16 C 0.01 0.34 5.97 30.10 0.18 0.52 16 17 C -0.10 -4.18 5.24 30.66 0.16 -4.02 16 18 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 19 H 0.04 1.00 7.42 -2.38 -0.02 0.98 16 20 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 21 H 0.06 1.80 7.07 -2.39 -0.02 1.78 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 25 H 0.34 9.77 8.04 -89.69 -0.72 9.05 16 26 H 0.05 1.80 7.35 -2.38 -0.02 1.78 16 27 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.03 1.60 4.60 -2.39 -0.01 1.59 16 29 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 31 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.02 1.44 7.07 -2.38 -0.02 1.42 16 33 H 0.05 1.82 8.05 -2.39 -0.02 1.80 16 34 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -59.83 262.03 2.19 -57.64 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.24 Total: 8.92 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 2.63 Total: -32.34 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -2.57 Total: -80.29 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.89 Total: 46.07 kcal Total: -59.83 2.19 -57.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885288115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.872 kcal (2) G-P(sol) polarization free energy of solvation -59.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds