Wall clock time and date at job start Mon Mar 30 2020 20:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47263 * 2 1 4 4 F 1.39908 * 109.46990 * 240.00323 * 2 1 3 5 5 C 1.53000 * 109.47344 * 120.00610 * 2 1 3 6 6 N 1.46496 * 109.46989 * 184.99848 * 5 2 1 7 7 C 1.35070 * 126.48768 * 264.68294 * 6 5 2 8 8 N 1.31015 * 109.64957 * 179.88585 * 7 6 5 9 9 C 1.33021 * 109.97688 * 0.39034 * 8 7 6 10 10 C 1.38441 * 126.48207 * 84.99934 * 6 5 2 11 11 C 1.40054 * 127.06029 * 359.97438 * 10 6 5 12 12 H 1.07996 * 120.00503 * 7.24469 * 11 10 6 13 13 C 1.40074 * 119.99772 * 187.24432 * 11 10 6 14 14 N 1.30852 * 120.00189 * 10.56232 * 13 11 10 15 15 Si 1.86808 * 119.99912 * 190.56259 * 13 11 10 16 16 H 1.48498 * 109.46798 * 93.95731 * 15 13 11 17 17 H 1.48498 * 109.46907 * 213.95288 * 15 13 11 18 18 H 1.48492 * 109.46915 * 333.95536 * 15 13 11 19 19 H 1.08999 * 109.46580 * 299.99693 * 1 2 3 20 20 H 1.08998 * 109.47028 * 59.99598 * 1 2 3 21 21 H 1.08997 * 109.47074 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46609 * 304.99887 * 5 2 1 23 23 H 1.09000 * 109.47150 * 64.99730 * 5 2 1 24 24 H 1.07998 * 125.17650 * 0.03934 * 7 6 5 25 25 H 1.07997 * 126.26533 * 179.76540 * 9 8 7 26 26 H 0.97004 * 120.00027 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9964 -0.6595 -1.1424 5 6 2.0401 -0.7214 1.2491 6 7 3.5001 -0.6180 1.3108 7 6 4.3895 -1.5312 0.8643 8 7 5.6082 -1.1027 1.0827 9 6 5.5720 0.0857 1.6792 10 6 4.2292 0.4316 1.8431 11 6 3.7237 1.6001 2.4266 12 1 2.6629 1.7010 2.6018 13 6 4.5942 2.6381 2.7830 14 7 5.8416 2.6103 2.3887 15 14 3.9743 4.0620 3.8212 16 1 4.2493 3.7862 5.2542 17 1 4.6691 5.3099 3.4151 18 1 2.5118 4.2216 3.6196 19 1 -0.3632 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 1.6054 -0.2619 2.1369 23 1 1.7517 -1.7716 1.2054 24 1 4.1349 -2.4706 0.3961 25 1 6.4250 0.6751 1.9814 26 1 6.4443 3.3294 2.6351 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212276880.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:03 Heat of formation + Delta-G solvation = -28.861786 kcal Electronic energy + Delta-G solvation = -12594.390902 eV Core-core repulsion = 10201.070655 eV Total energy + Delta-G solvation = -2393.320247 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.62133 -41.78372 -35.60024 -35.53471 -32.36446 -30.56565 -27.16680 -26.66960 -22.85262 -21.80668 -21.15355 -19.03485 -17.63448 -17.34142 -16.63513 -16.37541 -15.69991 -14.87897 -14.70257 -14.43462 -14.00272 -13.56210 -13.13676 -13.09237 -12.96445 -12.84526 -12.50354 -12.16994 -11.90496 -11.78565 -11.21736 -10.25331 -10.01337 -8.96819 -8.55821 -6.25917 1.29814 1.42823 1.57908 1.84622 2.20215 2.52384 2.75711 3.35448 3.57363 3.75417 3.92945 4.00575 4.37254 4.40114 4.57985 4.82520 4.97312 5.09332 5.16352 5.19243 5.66708 5.76377 5.96516 6.51945 6.84815 6.94302 7.22341 7.95196 8.45644 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.032962 B = 0.013590 C = 0.010371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.249414 B = 2059.796704 C = 2699.092410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.069 3.931 3 H 0.065 0.935 4 F -0.229 7.229 5 C 0.095 3.905 6 N -0.499 5.499 7 C 0.070 3.930 8 N -0.523 5.523 9 C -0.185 4.185 10 C 0.163 3.837 11 C -0.473 4.473 12 H 0.088 0.912 13 C 0.027 3.973 14 N -0.834 5.834 15 Si 1.002 2.998 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.249 1.249 19 H 0.094 0.906 20 H 0.075 0.925 21 H 0.084 0.916 22 H 0.108 0.892 23 H 0.113 0.887 24 H 0.201 0.799 25 H 0.151 0.849 26 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.364 -0.196 0.148 12.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 H 0.083 0.917 4 F -0.210 7.210 5 C -0.028 4.028 6 N -0.191 5.191 7 C -0.205 4.205 8 N -0.242 5.242 9 C -0.331 4.331 10 C 0.051 3.949 11 C -0.508 4.508 12 H 0.106 0.894 13 C -0.187 4.187 14 N -0.462 5.462 15 Si 0.822 3.178 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.172 1.172 19 H 0.113 0.887 20 H 0.094 0.906 21 H 0.103 0.897 22 H 0.126 0.874 23 H 0.131 0.869 24 H 0.218 0.782 25 H 0.168 0.832 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.517 -0.590 -0.130 11.533 hybrid contribution -0.232 0.879 0.332 0.967 sum -11.749 0.288 0.202 11.754 Atomic orbital electron populations 1.22254 0.89930 1.04900 1.04906 1.22138 0.97332 0.95848 0.81475 0.91688 1.92771 1.91007 1.83444 1.53769 1.22345 0.77872 1.03570 0.99022 1.45258 1.06404 1.17693 1.49767 1.24361 0.84524 0.99190 1.12405 1.69389 1.23651 1.13688 1.17425 1.22848 0.96475 0.96322 1.17448 1.19278 0.90710 0.88902 0.95975 1.18722 0.95831 0.98342 1.37873 0.89392 1.26805 0.94387 1.01849 0.95697 1.69856 1.06671 1.32832 1.36818 0.84901 0.79658 0.75433 0.77853 1.19063 1.19774 1.17210 0.88672 0.90557 0.89729 0.87423 0.86892 0.78195 0.83156 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 9.65 71.98 0.69 -2.59 15 2 C 0.07 2.19 4.22 30.59 0.13 2.32 15 3 H 0.06 2.40 8.14 -2.39 -0.02 2.38 15 4 F -0.23 -8.46 17.07 44.97 0.77 -7.69 15 5 C 0.09 3.18 5.66 86.38 0.49 3.67 15 6 N -0.50 -23.48 2.78 -519.75 -1.44 -24.92 15 7 C 0.07 3.47 12.51 180.10 2.25 5.72 15 8 N -0.52 -30.17 11.18 -196.92 -2.20 -32.37 15 9 C -0.18 -11.28 10.85 84.85 0.92 -10.36 15 10 C 0.16 9.10 6.70 38.87 0.26 9.36 15 11 C -0.47 -24.69 9.06 23.16 0.21 -24.48 15 12 H 0.09 4.11 7.41 -2.91 -0.02 4.09 15 13 C 0.03 1.34 5.45 85.28 0.47 1.81 15 14 N -0.83 -45.43 10.59 21.86 0.23 -45.19 15 15 Si 1.00 37.40 29.58 68.60 2.03 39.43 15 16 H -0.27 -9.69 7.11 99.48 0.71 -8.99 15 17 H -0.27 -9.91 7.11 99.48 0.71 -9.20 15 18 H -0.25 -8.56 7.11 99.48 0.71 -7.86 15 19 H 0.09 1.59 8.14 -2.39 -0.02 1.57 15 20 H 0.08 1.44 8.14 -2.39 -0.02 1.42 15 21 H 0.08 1.43 8.14 -2.39 -0.02 1.41 15 22 H 0.11 3.28 7.67 -2.38 -0.02 3.26 15 23 H 0.11 3.07 8.13 -2.39 -0.02 3.05 15 24 H 0.20 8.09 8.06 -2.91 -0.02 8.07 15 25 H 0.15 9.70 6.05 -2.91 -0.02 9.68 15 26 H 0.29 14.05 8.30 -92.71 -0.77 13.28 15 Total: -1.00 -69.13 234.79 5.98 -63.15 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 1.17 Total: 22.15 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 5.42 Total: -14.55 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -3.41 Total: -102.49 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 0.77 Total: -7.69 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Total: -69.13 5.98 -63.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212276880.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.286 kcal (2) G-P(sol) polarization free energy of solvation -69.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds