Wall clock time and date at job start Mon Mar 30 2020 20:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47015 * 2 1 4 4 F 1.39901 * 109.47168 * 119.99960 * 2 1 3 5 5 C 1.53002 * 109.47242 * 240.00313 * 2 1 3 6 6 N 1.46504 * 109.46779 * 174.99802 * 5 2 1 7 7 N 1.40025 * 126.20149 * 90.02491 * 6 5 2 8 8 C 1.31233 * 109.11104 * 179.97438 * 7 6 5 9 9 C 1.38702 * 109.08259 * 359.97438 * 8 7 6 10 10 C 1.37454 * 126.20417 * 270.02168 * 6 5 2 11 11 C 1.40231 * 126.66073 * 0.03691 * 10 6 5 12 12 H 1.08001 * 120.00305 * 0.02562 * 11 10 6 13 13 C 1.40173 * 120.00026 * 180.02562 * 11 10 6 14 14 N 1.30759 * 119.99989 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99838 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47413 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47012 * 120.00116 * 15 13 11 18 18 H 1.48503 * 109.47296 * 239.99714 * 15 13 11 19 19 H 1.08994 * 109.47184 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47441 * 299.99756 * 1 2 3 21 21 H 1.09002 * 109.47085 * 60.00415 * 1 2 3 22 22 H 1.08992 * 109.47317 * 55.00119 * 5 2 1 23 23 H 1.08999 * 109.46831 * 294.99566 * 5 2 1 24 24 H 1.08004 * 125.45951 * 179.97438 * 8 7 6 25 25 H 1.07998 * 126.23561 * 179.97438 * 9 8 7 26 26 H 0.96994 * 119.99894 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0400 -0.7212 -1.2493 6 7 3.5001 -0.6177 -1.3109 7 7 4.4172 -1.5180 -0.7549 8 6 5.6356 -1.1024 -1.0098 9 6 5.5697 0.0766 -1.7374 10 6 4.2181 0.3807 -1.9250 11 6 3.6961 1.4888 -2.6078 12 1 2.6270 1.6191 -2.6883 13 6 4.5620 2.4275 -3.1857 14 7 5.8564 2.2696 -3.0886 15 14 3.8667 3.9040 -4.0944 16 1 2.3831 3.8519 -4.0615 17 1 4.3323 5.1527 -3.4394 18 1 4.3322 3.8816 -5.5045 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.6055 -0.2617 -2.1369 23 1 1.7517 -1.7714 -1.2056 24 1 6.5441 -1.5989 -0.7023 25 1 6.4095 0.6551 -2.0929 26 1 6.4555 2.9194 -3.4881 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212277444.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:16 Heat of formation + Delta-G solvation = 4.190368 kcal Electronic energy + Delta-G solvation = -12549.151434 eV Core-core repulsion = 10157.264436 eV Total energy + Delta-G solvation = -2391.886998 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.00387 -38.81130 -33.73932 -33.62819 -30.23433 -28.66096 -25.39567 -25.00176 -21.38631 -19.62688 -19.07896 -16.97580 -15.96454 -15.58753 -14.94240 -14.53507 -13.90963 -13.05874 -12.59615 -12.51429 -12.25030 -12.01165 -11.73811 -11.64094 -11.33800 -11.05738 -10.64496 -10.49670 -10.31670 -9.79192 -9.48091 -8.64427 -7.77714 -6.78720 -6.64772 -4.48091 2.89919 3.04008 3.08234 3.60997 3.83191 4.11698 4.56510 4.99507 5.05681 5.24726 5.38764 5.45464 5.63403 5.88363 6.06318 6.21830 6.39020 6.55133 7.03199 7.33066 7.48488 7.82971 8.13164 8.49015 8.71401 8.84923 9.21070 9.66986 10.24174 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.033092 B = 0.013453 C = 0.010129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.910998 B = 2080.872718 C = 2763.741482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.070 3.930 3 H 0.086 0.914 4 F -0.209 7.209 5 C 0.134 3.866 6 N -0.431 5.431 7 N -0.386 5.386 8 C 0.037 3.963 9 C -0.360 4.360 10 C 0.249 3.751 11 C -0.452 4.452 12 H 0.074 0.926 13 C 0.077 3.923 14 N -0.785 5.785 15 Si 0.922 3.078 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.273 1.273 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.080 0.920 24 H 0.145 0.855 25 H 0.159 0.841 26 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.007 1.133 0.360 7.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.032 3.968 3 H 0.104 0.896 4 F -0.190 7.190 5 C 0.010 3.990 6 N -0.220 5.220 7 N -0.208 5.208 8 C -0.144 4.144 9 C -0.391 4.391 10 C 0.130 3.870 11 C -0.488 4.488 12 H 0.092 0.908 13 C -0.143 4.143 14 N -0.412 5.412 15 Si 0.747 3.253 16 H -0.186 1.186 17 H -0.198 1.198 18 H -0.198 1.198 19 H 0.084 0.916 20 H 0.084 0.916 21 H 0.094 0.906 22 H 0.110 0.890 23 H 0.098 0.902 24 H 0.162 0.838 25 H 0.176 0.824 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.558 0.250 0.904 7.616 hybrid contribution 0.275 1.316 -0.731 1.530 sum -7.282 1.566 0.174 7.451 Atomic orbital electron populations 1.22319 0.94503 1.03181 1.03297 1.22093 0.93885 0.97401 0.83429 0.89585 1.92810 1.90395 1.83252 1.52589 1.21608 0.79292 1.01140 0.96999 1.48431 1.03009 1.21463 1.49059 1.76934 0.98412 1.17791 1.27696 1.23169 0.94727 0.97236 0.99244 1.22146 0.96772 1.02418 1.17764 1.18805 0.90408 0.87400 0.90337 1.18622 0.94171 1.04742 1.31311 0.90818 1.25749 0.94461 0.99019 0.95050 1.69744 1.03277 1.33373 1.34788 0.86036 0.79955 0.80145 0.79181 1.18644 1.19818 1.19802 0.91606 0.91576 0.90622 0.88988 0.90207 0.83753 0.82434 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 9.65 37.16 0.36 -1.92 15 2 C 0.07 1.27 4.22 -26.73 -0.11 1.16 15 3 H 0.09 1.67 8.14 -51.93 -0.42 1.24 15 4 F -0.21 -4.47 17.07 2.25 0.04 -4.43 15 5 C 0.13 2.70 5.98 -4.04 -0.02 2.68 15 6 N -0.43 -11.08 3.67 -58.62 -0.22 -11.29 15 7 N -0.39 -10.41 12.54 30.45 0.38 -10.02 15 8 C 0.04 0.98 11.93 -17.64 -0.21 0.77 15 9 C -0.36 -10.11 9.77 -38.82 -0.38 -10.49 15 10 C 0.25 6.88 6.75 -84.01 -0.57 6.31 15 11 C -0.45 -11.78 9.02 -38.11 -0.34 -12.12 15 12 H 0.07 1.77 7.21 -52.49 -0.38 1.39 15 13 C 0.08 1.90 5.50 -17.28 -0.10 1.80 15 14 N -0.78 -20.25 10.30 55.56 0.57 -19.68 15 15 Si 0.92 18.25 29.56 -169.99 -5.03 13.22 15 16 H -0.26 -5.05 7.11 56.52 0.40 -4.64 15 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 18 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 19 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 20 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 22 H 0.09 1.67 7.41 -51.93 -0.38 1.28 15 23 H 0.08 1.51 8.14 -51.93 -0.42 1.09 15 24 H 0.15 3.24 8.06 -52.48 -0.42 2.82 15 25 H 0.16 4.51 5.73 -52.49 -0.30 4.21 15 26 H 0.28 6.45 8.29 -40.82 -0.34 6.11 15 LS Contribution 234.69 15.07 3.54 3.54 Total: -1.00 -30.85 234.69 -4.82 -35.67 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -2.73 Total: 4.81 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -1.37 Total: -11.81 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.74 Total: -40.99 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.04 Total: -4.43 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.85 -4.82 -35.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212277444.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.856 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds