Wall clock time and date at job start Mon Mar 30 2020 20:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46416 * 119.53230 * 2 1 4 4 C 1.53045 * 109.51640 * 144.14443 * 3 2 1 5 5 C 1.50812 * 109.18372 * 46.69783 * 4 3 2 6 6 O 1.21230 * 120.01611 * 145.78704 * 5 4 3 7 7 N 1.34554 * 119.96678 * 325.76868 * 5 4 3 8 8 C 1.37510 * 119.50678 * 184.41588 * 7 5 4 9 9 H 1.07997 * 119.99974 * 38.82890 * 8 7 5 10 10 C 1.38902 * 120.00000 * 219.10808 * 8 7 5 11 11 N 1.31380 * 119.99605 * 17.51081 * 10 8 7 12 12 Si 1.86790 * 119.99983 * 197.51277 * 10 8 7 13 13 H 1.48508 * 109.47230 * 90.00054 * 12 10 8 14 14 H 1.48504 * 109.47014 * 209.99816 * 12 10 8 15 15 H 1.48491 * 109.47368 * 329.99847 * 12 10 8 16 16 C 1.34201 * 119.58589 * 180.24915 * 2 1 3 17 17 O 1.21526 * 119.13677 * 5.69117 * 16 2 1 18 18 H 1.08998 * 109.47265 * 89.99813 * 1 2 3 19 19 H 1.09007 * 109.46886 * 209.99585 * 1 2 3 20 20 H 1.08998 * 109.47605 * 329.99925 * 1 2 3 21 21 H 1.09002 * 109.46069 * 24.13367 * 3 2 1 22 22 H 1.09001 * 109.46439 * 264.15788 * 3 2 1 23 23 H 1.08996 * 109.52063 * 286.78717 * 4 3 2 24 24 H 1.09001 * 109.56220 * 166.63514 * 4 3 2 25 25 H 0.97008 * 119.99959 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1866 1.2739 0.0000 4 6 3.4559 1.1425 0.8449 5 6 4.1715 -0.1309 0.4696 6 8 5.3829 -0.1741 0.4891 7 7 3.4647 -1.2190 0.1133 8 6 4.1215 -2.4006 -0.1387 9 1 4.9627 -2.6919 0.4728 10 6 3.7066 -3.2166 -1.1833 11 7 2.9378 -2.7303 -2.1313 12 14 4.2418 -5.0053 -1.2404 13 1 3.2482 -5.8425 -0.5210 14 1 4.3325 -5.4500 -2.6544 15 1 5.5699 -5.1456 -0.5912 16 6 2.1275 -1.1670 -0.0051 17 8 1.5011 -2.2026 -0.1148 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3633 -0.8901 0.5138 20 1 -0.3634 0.8899 0.5138 21 1 1.5496 2.0522 0.4202 22 1 2.4567 1.5384 -1.0224 23 1 3.1888 1.1123 1.9012 24 1 4.1084 1.9955 0.6585 25 1 2.6478 -3.3003 -2.8607 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214650496.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:35 Heat of formation + Delta-G solvation = -69.856986 kcal Electronic energy + Delta-G solvation = -13209.963272 eV Core-core repulsion = 10802.492550 eV Total energy + Delta-G solvation = -2407.470722 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.20828 -39.34059 -37.18026 -35.89179 -33.81335 -32.09806 -28.09374 -27.15449 -24.92655 -23.42948 -20.51643 -19.06845 -18.35096 -17.54107 -17.20956 -16.33948 -15.67391 -15.50476 -15.33784 -15.00636 -14.24175 -13.58969 -13.49609 -13.38474 -12.95310 -12.83427 -12.72984 -12.30480 -12.14117 -11.31811 -10.96782 -10.69569 -9.97395 -9.55113 -8.49074 -6.31650 1.19883 1.32738 1.41954 1.48302 1.91303 2.32509 2.65910 2.87040 3.25095 3.87383 3.94164 4.26128 4.34509 4.63757 4.71822 4.74559 4.96642 5.02722 5.32216 5.67964 5.86569 6.10018 6.32471 6.97690 7.10742 7.52810 7.97589 8.63244 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.041144 B = 0.016647 C = 0.012760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.369639 B = 1681.531894 C = 2193.800333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.637 5.637 3 C 0.117 3.883 4 C -0.141 4.141 5 C 0.461 3.539 6 O -0.581 6.581 7 N -0.430 5.430 8 C -0.387 4.387 9 H 0.082 0.918 10 C 0.026 3.974 11 N -0.873 5.873 12 Si 0.992 3.008 13 H -0.274 1.274 14 H -0.269 1.269 15 H -0.259 1.259 16 C 0.694 3.306 17 O -0.583 6.583 18 H 0.044 0.956 19 H 0.050 0.950 20 H 0.119 0.881 21 H 0.150 0.850 22 H 0.059 0.941 23 H 0.123 0.877 24 H 0.140 0.860 25 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.566 9.240 3.921 11.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.377 5.377 3 C -0.005 4.005 4 C -0.181 4.181 5 C 0.254 3.746 6 O -0.462 6.462 7 N -0.162 5.162 8 C -0.513 4.513 9 H 0.099 0.901 10 C -0.181 4.181 11 N -0.506 5.506 12 Si 0.814 3.186 13 H -0.200 1.200 14 H -0.194 1.194 15 H -0.183 1.183 16 C 0.398 3.602 17 O -0.459 6.459 18 H 0.062 0.938 19 H 0.069 0.931 20 H 0.137 0.863 21 H 0.167 0.833 22 H 0.077 0.923 23 H 0.141 0.859 24 H 0.158 0.842 25 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.421 8.641 3.691 10.848 hybrid contribution 0.380 -1.091 -0.359 1.210 sum -5.041 7.550 3.332 9.670 Atomic orbital electron populations 1.21616 0.76350 1.03763 1.01673 1.47101 1.08070 1.04230 1.78288 1.21777 0.92837 0.85645 1.00236 1.22257 0.97952 0.94250 1.03678 1.22161 0.88063 0.86072 0.78332 1.90507 1.16162 1.84984 1.54517 1.41907 1.05359 1.11154 1.57791 1.19311 1.17359 0.98072 1.16531 0.90056 1.26192 0.94923 1.04513 0.92461 1.69908 1.33475 1.37699 1.09547 0.84995 0.78778 0.76814 0.78008 1.19981 1.19396 1.18328 1.16036 0.81772 0.84480 0.77912 1.90680 1.66532 1.34259 1.54468 0.93765 0.93081 0.86263 0.83261 0.92278 0.85889 0.84233 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.12 10.36 127.77 1.32 4.44 15 2 N -0.64 -23.93 3.19 -866.47 -2.76 -26.69 15 3 C 0.12 3.11 6.63 86.41 0.57 3.68 15 4 C -0.14 -4.22 6.28 29.90 0.19 -4.04 15 5 C 0.46 22.43 7.43 87.73 0.65 23.09 15 6 O -0.58 -32.27 16.97 -2.88 -0.05 -32.32 15 7 N -0.43 -24.13 2.65 -599.30 -1.59 -25.71 15 8 C -0.39 -23.96 8.58 83.96 0.72 -23.24 15 9 H 0.08 5.12 7.79 -2.91 -0.02 5.10 15 10 C 0.03 1.55 4.39 84.92 0.37 1.93 15 11 N -0.87 -53.90 11.54 21.65 0.25 -53.65 15 12 Si 0.99 47.31 29.59 68.60 2.03 49.34 15 13 H -0.27 -12.97 7.11 99.48 0.71 -12.27 15 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 15 H -0.26 -11.80 7.11 99.48 0.71 -11.09 15 16 C 0.69 36.34 6.93 179.37 1.24 37.59 15 17 O -0.58 -35.03 13.64 -3.80 -0.05 -35.08 15 18 H 0.04 1.29 8.14 -2.39 -0.02 1.28 15 19 H 0.05 1.69 7.44 -2.38 -0.02 1.67 15 20 H 0.12 2.03 7.82 -2.39 -0.02 2.01 15 21 H 0.15 2.12 7.79 -2.39 -0.02 2.10 15 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 15 23 H 0.12 3.02 8.14 -2.39 -0.02 3.00 15 24 H 0.14 3.30 8.14 -2.39 -0.02 3.28 15 25 H 0.27 15.76 8.31 -92.70 -0.77 14.98 15 Total: -1.00 -84.41 221.24 4.10 -80.32 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: 1.20 Total: 0.34 kcal Atomic # 6 Polarization: 38.38 SS G_CDS: 5.07 Total: 43.45 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -4.10 Total: -106.05 kcal Atomic # 8 Polarization: -67.30 SS G_CDS: -0.10 Total: -67.40 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -84.41 4.10 -80.32 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214650496.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.461 kcal (2) G-P(sol) polarization free energy of solvation -84.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds