Wall clock time and date at job start Mon Mar 30 2020 20:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99379 * 2 1 4 4 C 1.50697 * 109.46888 * 180.02562 * 3 2 1 5 5 N 1.29949 * 126.29094 * 89.97879 * 4 3 2 6 6 O 1.21299 * 110.25253 * 180.02562 * 5 4 3 7 7 C 1.33638 * 109.81146 * 359.97438 * 6 5 4 8 8 C 1.50697 * 126.54638 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47266 * 270.02308 * 8 7 6 10 10 H 1.07999 * 119.99988 * 0.02562 * 9 8 7 11 11 C 1.37885 * 120.00047 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 8 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47021 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47081 * 119.99727 * 13 11 9 16 16 H 1.48501 * 109.47213 * 240.00099 * 13 11 9 17 17 N 1.31126 * 106.90184 * 0.22991 * 7 6 5 18 18 H 1.09002 * 109.46848 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47297 * 299.99021 * 1 2 3 20 20 H 1.08998 * 109.47547 * 60.00036 * 1 2 3 21 21 H 1.08999 * 109.47065 * 60.00659 * 3 2 1 22 22 H 1.08996 * 109.47604 * 300.00443 * 3 2 1 23 23 H 1.09004 * 109.47205 * 150.02402 * 8 7 6 24 24 H 1.08997 * 109.47395 * 30.02894 * 8 7 6 25 25 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5124 1.1867 -0.0006 5 7 4.2787 1.1258 -1.0484 6 8 5.4409 1.0334 -0.7137 7 6 5.5292 1.0269 0.6197 8 6 6.7926 0.9260 1.4349 9 6 7.1007 -0.5239 1.7068 10 1 6.4472 -1.2952 1.3269 11 6 8.2169 -0.8657 2.4406 12 7 9.0156 0.0734 2.8986 13 14 8.5992 -2.6629 2.7770 14 1 7.5567 -3.5161 2.1518 15 1 9.9265 -3.0023 2.2040 16 1 8.6177 -2.8991 4.2430 17 7 4.3061 1.1194 1.0832 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5137 0.8901 20 1 -0.3634 0.5138 -0.8899 21 1 1.6885 1.8464 0.8900 22 1 1.6884 1.8465 -0.8899 23 1 6.6582 1.4523 2.3800 24 1 7.6180 1.3756 0.8830 25 1 9.8007 -0.1671 3.4152 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234746004.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:04 Heat of formation + Delta-G solvation = 14.931684 kcal Electronic energy + Delta-G solvation = -12086.089688 eV Core-core repulsion = 9682.295678 eV Total energy + Delta-G solvation = -2403.794009 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.81198 -37.96923 -35.11314 -33.81628 -32.02927 -28.80447 -28.13573 -25.88041 -24.04455 -22.60921 -20.62443 -17.61368 -16.88732 -16.48447 -16.11015 -15.75245 -15.27602 -14.75038 -13.44450 -12.90814 -12.51476 -12.42929 -12.11362 -11.68142 -11.36200 -11.08218 -10.80468 -10.77770 -10.34578 -10.10909 -9.85523 -9.81754 -8.97770 -8.60765 -6.24094 -4.29375 1.86027 2.77237 3.24948 3.32573 3.38889 3.68577 3.87616 4.33121 4.47405 4.60886 5.08888 5.13865 5.22097 5.26600 5.50428 5.54682 5.92772 6.54352 6.65482 6.99598 7.11998 7.18603 7.70500 7.92789 8.71579 8.89921 9.35621 10.86389 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.048456 B = 0.008085 C = 0.007381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.709367 B = 3462.349577 C = 3792.834914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.163 3.837 4 C 0.154 3.846 5 N -0.393 5.393 6 O 0.067 5.933 7 C 0.239 3.761 8 C 0.100 3.900 9 C -0.523 4.523 10 H 0.062 0.938 11 C 0.066 3.934 12 N -0.888 5.888 13 Si 0.907 3.093 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.281 1.281 17 N -0.498 5.498 18 H 0.088 0.912 19 H 0.045 0.955 20 H 0.042 0.958 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 2.289 -4.028 12.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.085 3.915 4 C -0.120 4.120 5 N -0.106 5.106 6 O 0.010 5.990 7 C 0.021 3.979 8 C 0.062 3.938 9 C -0.562 4.562 10 H 0.081 0.919 11 C -0.137 4.137 12 N -0.526 5.526 13 Si 0.734 3.266 14 H -0.195 1.195 15 H -0.206 1.206 16 H -0.206 1.206 17 N -0.232 5.232 18 H 0.107 0.893 19 H 0.063 0.937 20 H 0.061 0.939 21 H 0.098 0.902 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.474 2.201 -4.422 12.492 hybrid contribution 0.174 -0.760 0.291 0.833 sum -11.300 1.441 -4.131 12.117 Atomic orbital electron populations 1.22768 0.80342 1.03102 1.00091 1.87987 1.20006 1.26642 1.95452 1.20277 0.83442 0.85661 1.02086 1.25220 0.98620 1.03122 0.84997 1.74493 0.90318 1.21340 1.24401 1.85261 1.21654 1.65697 1.26426 1.30193 0.98013 0.89069 0.80636 1.18241 0.82485 1.00070 0.93041 1.20857 1.10010 0.89918 1.35425 0.91927 1.24929 0.95433 0.98435 0.94930 1.69935 1.14469 1.32620 1.35576 0.86285 0.78362 0.83816 0.78161 1.19525 1.20619 1.20639 1.71936 1.00208 1.22586 1.28455 0.89315 0.93670 0.93912 0.90202 0.90901 0.91221 0.92240 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 15 2 O -0.38 -6.19 10.69 -35.23 -0.38 -6.57 15 3 C 0.16 2.52 6.56 36.00 0.24 2.75 15 4 C 0.15 3.13 7.85 -156.36 -1.23 1.90 15 5 N -0.39 -8.37 12.16 30.90 0.38 -7.99 15 6 O 0.07 1.50 11.31 18.12 0.20 1.70 15 7 C 0.24 5.55 7.70 -13.06 -0.10 5.45 15 8 C 0.10 2.48 5.60 -29.04 -0.16 2.32 15 9 C -0.52 -14.29 9.09 -34.44 -0.31 -14.60 15 10 H 0.06 1.75 7.74 -52.49 -0.41 1.34 15 11 C 0.07 1.79 5.46 -17.82 -0.10 1.69 15 12 N -0.89 -24.78 13.29 55.43 0.74 -24.04 15 13 Si 0.91 21.02 29.54 -169.99 -5.02 15.99 15 14 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 17 N -0.50 -11.36 11.55 -9.87 -0.11 -11.47 15 18 H 0.09 0.81 8.14 -51.93 -0.42 0.39 15 19 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 15 20 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 15 21 H 0.08 1.07 8.14 -51.93 -0.42 0.64 15 22 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 23 H 0.07 1.77 8.14 -51.93 -0.42 1.35 15 24 H 0.06 1.45 8.14 -51.93 -0.42 1.03 15 25 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 LS Contribution 236.16 15.07 3.56 3.56 Total: -1.00 -30.21 236.16 -3.69 -33.89 By element: Atomic # 1 Polarization: -3.55 SS G_CDS: -2.50 Total: -6.05 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -0.55 Total: 0.97 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 1.00 Total: -43.51 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.17 Total: -4.87 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.21 -3.69 -33.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234746004.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.825 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds