Wall clock time and date at job start Mon Mar 30 2020 20:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99379 * 2 1 4 4 C 1.50697 * 109.46888 * 180.02562 * 3 2 1 5 5 N 1.29949 * 126.29094 * 89.97879 * 4 3 2 6 6 O 1.21299 * 110.25253 * 180.02562 * 5 4 3 7 7 C 1.33638 * 109.81146 * 359.97438 * 6 5 4 8 8 C 1.50697 * 126.54638 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47266 * 270.02308 * 8 7 6 10 10 H 1.07999 * 119.99988 * 0.02562 * 9 8 7 11 11 C 1.37885 * 120.00047 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 8 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47021 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47081 * 119.99727 * 13 11 9 16 16 H 1.48501 * 109.47213 * 240.00099 * 13 11 9 17 17 N 1.31126 * 106.90184 * 0.22991 * 7 6 5 18 18 H 1.09002 * 109.46848 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47297 * 299.99021 * 1 2 3 20 20 H 1.08998 * 109.47547 * 60.00036 * 1 2 3 21 21 H 1.08999 * 109.47065 * 60.00659 * 3 2 1 22 22 H 1.08996 * 109.47604 * 300.00443 * 3 2 1 23 23 H 1.09004 * 109.47205 * 150.02402 * 8 7 6 24 24 H 1.08997 * 109.47395 * 30.02894 * 8 7 6 25 25 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5124 1.1867 -0.0006 5 7 4.2787 1.1258 -1.0484 6 8 5.4409 1.0334 -0.7137 7 6 5.5292 1.0269 0.6197 8 6 6.7926 0.9260 1.4349 9 6 7.1007 -0.5239 1.7068 10 1 6.4472 -1.2952 1.3269 11 6 8.2169 -0.8657 2.4406 12 7 9.0156 0.0734 2.8986 13 14 8.5992 -2.6629 2.7770 14 1 7.5567 -3.5161 2.1518 15 1 9.9265 -3.0023 2.2040 16 1 8.6177 -2.8991 4.2430 17 7 4.3061 1.1194 1.0832 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5137 0.8901 20 1 -0.3634 0.5138 -0.8899 21 1 1.6885 1.8464 0.8900 22 1 1.6884 1.8465 -0.8899 23 1 6.6582 1.4523 2.3800 24 1 7.6180 1.3756 0.8830 25 1 9.8007 -0.1671 3.4152 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234746004.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:04 Heat of formation + Delta-G solvation = -7.447247 kcal Electronic energy + Delta-G solvation = -12087.060111 eV Core-core repulsion = 9682.295678 eV Total energy + Delta-G solvation = -2404.764433 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -46.51610 -39.09028 -36.81849 -35.74763 -33.87836 -30.56806 -29.51670 -26.87554 -26.04158 -24.30510 -22.30966 -19.36501 -18.54746 -18.32530 -17.37508 -16.99780 -16.56859 -16.51576 -15.20113 -14.47810 -14.35330 -13.69245 -13.54965 -13.12417 -13.00543 -12.83061 -12.62283 -12.28457 -12.19544 -11.97796 -11.77393 -10.83737 -10.80426 -10.67472 -8.31559 -6.44653 0.14398 1.11839 1.43065 1.44884 1.57305 1.95034 2.39670 2.48531 2.98961 3.09189 3.25843 3.95771 4.16494 4.41443 4.48465 4.55896 4.77347 4.82708 4.91543 5.09276 5.21153 5.58770 5.87387 6.01325 6.59709 7.16033 7.24211 8.79466 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.048456 B = 0.008085 C = 0.007381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.709367 B = 3462.349577 C = 3792.834914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.420 6.420 3 C 0.163 3.837 4 C 0.158 3.842 5 N -0.399 5.399 6 O 0.058 5.942 7 C 0.232 3.768 8 C 0.109 3.891 9 C -0.546 4.546 10 H 0.050 0.950 11 C 0.023 3.977 12 N -0.914 5.914 13 Si 0.971 3.029 14 H -0.274 1.274 15 H -0.270 1.270 16 H -0.272 1.272 17 N -0.513 5.513 18 H 0.098 0.902 19 H 0.061 0.939 20 H 0.063 0.937 21 H 0.101 0.899 22 H 0.103 0.897 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.213 1.813 -4.108 13.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.339 6.339 3 C 0.085 3.915 4 C -0.115 4.115 5 N -0.114 5.114 6 O 0.004 5.996 7 C 0.013 3.987 8 C 0.070 3.930 9 C -0.584 4.584 10 H 0.068 0.932 11 C -0.178 4.178 12 N -0.552 5.552 13 Si 0.795 3.205 14 H -0.198 1.198 15 H -0.195 1.195 16 H -0.197 1.197 17 N -0.248 5.248 18 H 0.117 0.883 19 H 0.080 0.920 20 H 0.082 0.918 21 H 0.119 0.881 22 H 0.121 0.879 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.584 1.735 -4.513 13.481 hybrid contribution 0.424 -0.583 0.296 0.780 sum -12.160 1.151 -4.217 12.922 Atomic orbital electron populations 1.23051 0.77442 1.04446 1.01935 1.87919 1.23134 1.26974 1.95833 1.20581 0.80175 0.86141 1.04613 1.26150 1.00755 1.00887 0.83744 1.74481 0.90006 1.22151 1.24748 1.85246 1.22458 1.66074 1.25838 1.29817 0.97854 0.89911 0.81079 1.17963 0.83299 0.98906 0.92816 1.21043 1.10418 0.90778 1.36176 0.93177 1.25717 0.95037 1.02615 0.94409 1.70005 1.14872 1.34525 1.35819 0.85309 0.78295 0.78620 0.78286 1.19813 1.19465 1.19747 1.71938 1.00348 1.22842 1.29668 0.88332 0.92041 0.91796 0.88090 0.87909 0.92319 0.92428 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 15 2 O -0.42 -12.66 10.69 -148.98 -1.59 -14.25 15 3 C 0.16 4.61 6.56 71.24 0.47 5.08 15 4 C 0.16 6.27 7.85 138.46 1.09 7.35 15 5 N -0.40 -16.74 12.16 -60.31 -0.73 -17.47 15 6 O 0.06 2.60 11.31 74.89 0.85 3.44 15 7 C 0.23 10.88 7.70 88.38 0.68 11.56 15 8 C 0.11 5.51 5.60 29.10 0.16 5.67 15 9 C -0.55 -30.13 9.09 25.60 0.23 -29.90 15 10 H 0.05 2.83 7.74 -2.91 -0.02 2.81 15 11 C 0.02 1.25 5.46 84.66 0.46 1.71 15 12 N -0.91 -50.92 13.29 21.45 0.28 -50.63 15 13 Si 0.97 42.71 29.54 68.60 2.03 44.74 15 14 H -0.27 -12.05 7.11 99.48 0.71 -11.35 15 15 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 17 N -0.51 -23.27 11.55 -303.20 -3.50 -26.77 15 18 H 0.10 1.55 8.14 -2.39 -0.02 1.53 15 19 H 0.06 0.90 8.14 -2.39 -0.02 0.88 15 20 H 0.06 0.88 8.14 -2.39 -0.02 0.86 15 21 H 0.10 2.40 8.14 -2.39 -0.02 2.38 15 22 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 23 H 0.06 3.06 8.14 -2.38 -0.02 3.04 15 24 H 0.06 2.88 8.14 -2.39 -0.02 2.86 15 25 H 0.27 14.17 8.31 -92.71 -0.77 13.40 15 Total: -1.00 -63.42 236.16 2.86 -60.56 By element: Atomic # 1 Polarization: -4.00 SS G_CDS: 1.19 Total: -2.81 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 4.34 Total: 3.20 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -3.95 Total: -94.88 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.75 Total: -10.81 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -63.42 2.86 -60.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234746004.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.112 kcal (2) G-P(sol) polarization free energy of solvation -63.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds