Wall clock time and date at job start Mon Mar 30 2020 20:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29946 * 126.28426 * 2 1 4 4 O 1.21309 * 110.24521 * 179.68915 * 3 2 1 5 5 C 1.33639 * 109.80928 * 0.46841 * 4 3 2 6 6 C 1.50706 * 126.55037 * 179.79972 * 5 4 3 7 7 C 1.52997 * 109.47238 * 269.69219 * 6 5 4 8 8 H 1.08998 * 109.47192 * 54.99616 * 7 6 5 9 9 O 1.42896 * 109.46944 * 294.99550 * 7 6 5 10 10 C 1.50695 * 109.46942 * 174.99721 * 7 6 5 11 11 H 1.07997 * 120.00519 * 0.02562 * 10 7 6 12 12 C 1.37888 * 119.99951 * 179.97438 * 10 7 6 13 13 N 1.31512 * 119.99548 * 0.02562 * 12 10 7 14 14 Si 1.86794 * 119.99928 * 180.02562 * 12 10 7 15 15 H 1.48493 * 109.47285 * 60.00103 * 14 12 10 16 16 H 1.48503 * 109.46885 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47231 * 299.99869 * 14 12 10 18 18 N 1.31128 * 106.90120 * 359.54177 * 5 4 3 19 19 H 1.09000 * 109.47111 * 270.02312 * 1 2 3 20 20 H 1.08996 * 109.47178 * 30.02037 * 1 2 3 21 21 H 1.08999 * 109.47523 * 150.02146 * 1 2 3 22 22 H 1.09001 * 109.46953 * 29.68831 * 6 5 4 23 23 H 1.09000 * 109.47318 * 149.68429 * 6 5 4 24 24 H 0.96694 * 114.00569 * 299.99930 * 9 7 6 25 25 H 0.97002 * 119.99896 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 0.0062 5 6 3.5298 -0.6212 0.0006 6 6 4.7969 -1.4371 0.0009 7 6 5.2261 -1.7133 -1.4414 8 1 5.3165 -0.7704 -1.9805 9 8 4.2474 -2.5354 -2.0803 10 6 6.5559 -2.4223 -1.4427 11 1 7.0458 -2.6531 -0.5084 12 6 7.1467 -2.7772 -2.6370 13 7 6.5499 -2.4965 -3.7748 14 14 8.7947 -3.6566 -2.6386 15 1 8.6711 -4.9410 -1.9039 16 1 9.2113 -3.9246 -4.0386 17 1 9.8122 -2.8025 -1.9748 18 7 2.3030 -1.0841 0.0003 19 1 -0.3633 0.0004 1.0277 20 1 -0.3633 0.8898 -0.5141 21 1 -0.3634 -0.8901 -0.5135 22 1 5.5841 -0.8854 0.5149 23 1 4.6205 -2.3819 0.5149 24 1 4.1142 -3.3926 -1.6532 25 1 6.9654 -2.7465 -4.6149 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235803143.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:14 Heat of formation + Delta-G solvation = 5.974630 kcal Electronic energy + Delta-G solvation = -12385.176482 eV Core-core repulsion = 9980.994065 eV Total energy + Delta-G solvation = -2404.182416 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.03301 -36.33625 -35.47580 -32.94063 -32.19237 -29.77123 -28.66023 -25.79885 -23.15885 -21.88042 -20.39071 -17.63952 -17.28764 -16.61596 -14.72273 -14.59666 -14.29700 -13.98626 -13.41292 -13.26374 -12.95570 -12.41713 -12.03798 -11.34660 -11.14219 -10.91991 -10.88565 -10.80819 -10.49818 -10.17076 -9.66884 -9.08688 -8.66820 -8.27599 -6.09765 -4.30449 1.67183 2.72680 3.25646 3.31275 3.32000 3.41144 4.11355 4.32961 4.48637 5.17892 5.36522 5.47233 5.58078 5.77350 5.95921 6.03658 6.19123 6.33669 6.48015 6.59756 7.51407 7.72325 7.99485 8.66448 8.71507 9.29033 9.47296 10.94588 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.082624 B = 0.008155 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.804272 B = 3432.612404 C = 3535.060223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.160 3.840 3 N -0.403 5.403 4 O 0.063 5.937 5 C 0.217 3.783 6 C -0.062 4.062 7 C 0.237 3.763 8 H 0.061 0.939 9 O -0.559 6.559 10 C -0.577 4.577 11 H 0.062 0.938 12 C 0.081 3.919 13 N -0.856 5.856 14 Si 0.895 3.105 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.275 1.275 18 N -0.489 5.489 19 H 0.082 0.918 20 H 0.081 0.919 21 H 0.088 0.912 22 H 0.099 0.901 23 H 0.101 0.899 24 H 0.350 0.650 25 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.033 2.129 7.046 9.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.113 4.113 3 N -0.116 5.116 4 O 0.008 5.992 5 C -0.002 4.002 6 C -0.102 4.102 7 C 0.178 3.822 8 H 0.079 0.921 9 O -0.362 6.362 10 C -0.615 4.615 11 H 0.080 0.920 12 C -0.126 4.126 13 N -0.491 5.491 14 Si 0.722 3.278 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.200 1.200 18 N -0.223 5.223 19 H 0.101 0.899 20 H 0.100 0.900 21 H 0.107 0.893 22 H 0.117 0.883 23 H 0.119 0.881 24 H 0.194 0.806 25 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.700 3.157 6.432 9.810 hybrid contribution 1.152 -0.940 0.286 1.514 sum -5.548 2.217 6.718 8.990 Atomic orbital electron populations 1.20035 0.83651 1.04282 1.03583 1.25838 1.00337 0.84234 1.00904 1.74529 0.89697 1.24308 1.23082 1.85243 1.22058 1.25536 1.66351 1.29312 0.97506 0.81411 0.92020 1.21554 0.86422 0.96842 1.05364 1.19404 0.86940 0.92676 0.83204 0.92089 1.86596 1.61481 1.30151 1.57928 1.21489 1.05102 1.41791 0.93109 0.92024 1.25039 0.97258 0.94870 0.95448 1.70070 1.37712 1.43942 0.97402 0.86635 0.83777 0.80205 0.77178 1.20011 1.21181 1.20009 1.71902 0.99835 1.28839 1.21689 0.89903 0.90005 0.89280 0.88309 0.88104 0.80624 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.51 36.01 0.38 -0.32 15 2 C 0.16 2.84 8.22 -156.37 -1.28 1.55 15 3 N -0.40 -7.69 12.16 30.90 0.38 -7.32 15 4 O 0.06 1.24 11.31 18.11 0.20 1.44 15 5 C 0.22 4.24 7.54 -13.05 -0.10 4.15 15 6 C -0.06 -1.18 5.46 -27.88 -0.15 -1.33 15 7 C 0.24 5.71 2.81 -27.89 -0.08 5.63 15 8 H 0.06 1.64 8.14 -51.93 -0.42 1.22 15 9 O -0.56 -14.12 12.48 -35.23 -0.44 -14.56 15 10 C -0.58 -14.86 8.76 -34.44 -0.30 -15.16 15 11 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 12 C 0.08 2.18 5.40 -17.82 -0.10 2.08 15 13 N -0.86 -24.70 12.84 55.43 0.71 -23.99 15 14 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 15 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 17 H -0.27 -6.13 7.11 56.52 0.40 -5.72 15 18 N -0.49 -9.59 11.55 -9.87 -0.11 -9.70 15 19 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 20 H 0.08 0.89 8.14 -51.93 -0.42 0.46 15 21 H 0.09 1.02 8.14 -51.93 -0.42 0.59 15 22 H 0.10 1.67 8.14 -51.93 -0.42 1.25 15 23 H 0.10 1.76 8.14 -51.93 -0.42 1.34 15 24 H 0.35 7.81 9.04 45.56 0.41 8.22 15 25 H 0.26 7.21 8.31 -40.82 -0.34 6.88 15 LS Contribution 233.84 15.07 3.52 3.52 Total: -1.00 -30.75 233.84 -4.06 -34.81 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -1.67 Total: 3.89 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.63 Total: -3.41 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.97 Total: -41.01 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.24 Total: -13.12 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -30.75 -4.06 -34.81 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235803143.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.786 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds