Wall clock time and date at job start Mon Mar 30 2020 20:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 112.86452 * 2 1 4 4 C 1.51406 * 113.56372 * 131.08511 * 2 1 3 5 5 O 1.20760 * 136.31072 * 320.63717 * 4 2 1 6 6 C 1.51403 * 87.36926 * 140.63721 * 4 2 1 7 7 C 1.53673 * 87.41041 * 333.99533 * 6 4 2 8 8 H 1.08997 * 113.82535 * 271.42703 * 7 6 4 9 9 O 1.42900 * 113.82461 * 139.85171 * 7 6 4 10 10 C 1.42905 * 114.00140 * 113.87050 * 9 7 6 11 11 C 1.50697 * 109.47218 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00265 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99748 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00192 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99681 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.46999 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46880 * 120.00196 * 15 13 11 18 18 H 1.48499 * 109.47079 * 240.00099 * 15 13 11 19 19 H 1.08997 * 109.47060 * 308.42410 * 1 2 3 20 20 H 1.08998 * 109.47430 * 68.42235 * 1 2 3 21 21 H 1.08996 * 109.47143 * 188.42372 * 1 2 3 22 22 H 1.08994 * 109.47395 * 171.57367 * 3 2 1 23 23 H 1.08999 * 109.47286 * 291.57858 * 3 2 1 24 24 H 1.09001 * 109.46493 * 51.57559 * 3 2 1 25 25 H 1.09000 * 113.55918 * 88.62879 * 6 4 2 26 26 H 1.08997 * 113.56129 * 219.35762 * 6 4 2 27 27 H 1.08997 * 109.47270 * 300.00158 * 10 9 7 28 28 H 1.09008 * 109.46845 * 60.00065 * 10 9 7 29 29 H 0.97005 * 120.00158 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1244 1.4098 0.0000 4 6 2.1352 -0.9120 1.0460 5 8 1.8932 -1.2087 2.1913 6 6 3.1793 -1.2860 0.0153 7 6 2.1442 -0.9256 -1.0619 8 1 1.4992 -1.7562 -1.3482 9 8 2.6955 -0.2319 -2.1830 10 6 2.6447 -0.9701 -3.4056 11 6 3.2488 -0.1476 -4.5145 12 1 3.6335 0.8399 -4.3064 13 6 3.3113 -0.6562 -5.7945 14 7 2.8434 -1.8589 -6.0478 15 14 4.0608 0.3631 -7.1689 16 1 4.5109 1.6702 -6.6268 17 1 5.2231 -0.3604 -7.7443 18 1 3.0448 0.5892 -8.2280 19 1 -0.3633 0.6387 0.8051 20 1 -0.3634 0.3779 -0.9556 21 1 -0.3633 -1.0165 0.1505 22 1 3.2022 1.3496 0.1506 23 1 1.9174 1.8914 -0.9556 24 1 1.6770 1.9926 0.8051 25 1 4.0501 -0.6304 0.0195 26 1 3.4450 -2.3430 0.0280 27 1 3.2060 -1.8977 -3.2936 28 1 1.6072 -1.2002 -3.6482 29 1 2.8877 -2.2169 -6.9483 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238210878.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:26 Heat of formation + Delta-G solvation = -67.166741 kcal Electronic energy + Delta-G solvation = -12622.457255 eV Core-core repulsion = 10318.643535 eV Total energy + Delta-G solvation = -2303.813721 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.35892 -37.31960 -35.08072 -32.64035 -30.42389 -27.36097 -27.22838 -23.11062 -22.33252 -22.01809 -18.02176 -16.45739 -16.14771 -15.59479 -15.23850 -14.67483 -14.01635 -13.88022 -13.52791 -12.80918 -12.64250 -12.23535 -12.01533 -11.98683 -11.59271 -11.31700 -11.05426 -10.84129 -10.66058 -10.39268 -10.04629 -9.18699 -9.02729 -8.86957 -8.23154 -6.17542 -4.19752 1.97073 3.25293 3.32299 3.37985 4.00883 4.28907 4.56565 4.75831 4.98083 5.13133 5.19830 5.27679 5.49694 5.70516 5.81795 5.91670 5.93579 6.02997 6.07463 6.18488 6.28285 6.54252 7.01157 7.33396 7.60769 7.73186 8.06601 8.44752 8.92895 9.45533 10.93890 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.064275 B = 0.007678 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.525390 B = 3645.813372 C = 3729.680436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.139 4.139 3 C -0.109 4.109 4 C 0.369 3.631 5 O -0.431 6.431 6 C -0.213 4.213 7 C 0.087 3.913 8 H 0.088 0.912 9 O -0.365 6.365 10 C 0.192 3.808 11 C -0.516 4.516 12 H 0.068 0.932 13 C 0.057 3.943 14 N -0.897 5.897 15 Si 0.907 3.093 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.282 1.282 19 H 0.059 0.941 20 H 0.069 0.931 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.080 0.920 24 H 0.053 0.947 25 H 0.125 0.875 26 H 0.089 0.911 27 H 0.008 0.992 28 H 0.008 0.992 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 2.772 9.090 9.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.140 4.140 3 C -0.166 4.166 4 C 0.243 3.757 5 O -0.303 6.303 6 C -0.251 4.251 7 C 0.027 3.973 8 H 0.106 0.894 9 O -0.284 6.284 10 C 0.118 3.882 11 C -0.554 4.554 12 H 0.086 0.914 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.735 3.265 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.208 1.208 19 H 0.078 0.922 20 H 0.088 0.912 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.099 0.901 24 H 0.072 0.928 25 H 0.143 0.857 26 H 0.108 0.892 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.049 2.672 9.558 10.134 hybrid contribution 0.285 -0.002 -0.989 1.029 sum -1.764 2.670 8.569 9.147 Atomic orbital electron populations 1.21646 0.92810 1.01911 1.02709 1.23345 0.97342 0.98321 0.94993 1.21298 1.00423 0.91951 1.02909 1.25469 0.85669 0.79306 0.85263 1.90360 1.68143 1.55665 1.16134 1.24491 1.00775 1.03982 0.95810 1.22829 0.93588 0.94085 0.86761 0.89381 1.87914 1.80357 1.43017 1.17100 1.20339 0.96134 0.92045 0.79730 1.21066 1.39670 1.02722 0.91974 0.91402 1.24942 0.95541 0.95243 0.98682 1.69964 1.46190 1.16131 1.21359 0.86288 0.78785 0.80196 0.81279 1.19444 1.20831 1.20825 0.92197 0.91175 0.92652 0.92063 0.90085 0.92818 0.85743 0.89239 0.97440 0.97422 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.16 37.15 0.34 -1.45 15 2 C -0.14 -2.07 1.34 -155.18 -0.21 -2.28 15 3 C -0.11 -1.52 8.48 37.16 0.32 -1.21 15 4 C 0.37 5.65 8.21 -28.35 -0.23 5.42 15 5 O -0.43 -7.48 17.99 6.00 0.11 -7.37 15 6 C -0.21 -3.21 7.44 -27.40 -0.20 -3.41 15 7 C 0.09 1.52 3.83 -26.04 -0.10 1.42 15 8 H 0.09 1.50 7.84 -51.93 -0.41 1.10 15 9 O -0.37 -8.03 9.42 -35.23 -0.33 -8.37 15 10 C 0.19 4.96 5.53 36.00 0.20 5.15 15 11 C -0.52 -14.54 9.43 -34.44 -0.32 -14.86 15 12 H 0.07 1.90 7.81 -52.48 -0.41 1.49 15 13 C 0.06 1.60 5.46 -17.82 -0.10 1.51 15 14 N -0.90 -26.10 13.29 55.43 0.74 -25.37 15 15 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 15 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 19 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 20 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.05 0.71 8.09 -51.93 -0.42 0.29 15 22 H 0.06 0.84 7.21 -51.93 -0.37 0.46 15 23 H 0.08 1.23 7.94 -51.93 -0.41 0.81 15 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 25 H 0.12 1.80 7.52 -51.93 -0.39 1.41 15 26 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 15 28 H 0.01 0.21 8.14 -51.92 -0.42 -0.21 15 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 LS Contribution 254.01 15.07 3.83 3.83 Total: -1.00 -29.86 254.01 -5.08 -34.94 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: -4.09 Total: -4.14 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -0.31 Total: -9.71 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.74 Total: -25.37 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.22 Total: -15.73 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.86 -5.08 -34.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238210878.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.228 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds