Wall clock time and date at job start Mon Mar 30 2020 20:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 112.86452 * 2 1 4 4 C 1.51406 * 113.56372 * 131.08511 * 2 1 3 5 5 O 1.20760 * 136.31072 * 320.63717 * 4 2 1 6 6 C 1.51403 * 87.36926 * 140.63721 * 4 2 1 7 7 C 1.53673 * 87.41041 * 333.99533 * 6 4 2 8 8 H 1.08997 * 113.82535 * 271.42703 * 7 6 4 9 9 O 1.42900 * 113.82461 * 139.85171 * 7 6 4 10 10 C 1.42905 * 114.00140 * 113.87050 * 9 7 6 11 11 C 1.50697 * 109.47218 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00265 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99748 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00192 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99681 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.46999 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46880 * 120.00196 * 15 13 11 18 18 H 1.48499 * 109.47079 * 240.00099 * 15 13 11 19 19 H 1.08997 * 109.47060 * 308.42410 * 1 2 3 20 20 H 1.08998 * 109.47430 * 68.42235 * 1 2 3 21 21 H 1.08996 * 109.47143 * 188.42372 * 1 2 3 22 22 H 1.08994 * 109.47395 * 171.57367 * 3 2 1 23 23 H 1.08999 * 109.47286 * 291.57858 * 3 2 1 24 24 H 1.09001 * 109.46493 * 51.57559 * 3 2 1 25 25 H 1.09000 * 113.55918 * 88.62879 * 6 4 2 26 26 H 1.08997 * 113.56129 * 219.35762 * 6 4 2 27 27 H 1.08997 * 109.47270 * 300.00158 * 10 9 7 28 28 H 1.09008 * 109.46845 * 60.00065 * 10 9 7 29 29 H 0.97005 * 120.00158 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1244 1.4098 0.0000 4 6 2.1352 -0.9120 1.0460 5 8 1.8932 -1.2087 2.1913 6 6 3.1793 -1.2860 0.0153 7 6 2.1442 -0.9256 -1.0619 8 1 1.4992 -1.7562 -1.3482 9 8 2.6955 -0.2319 -2.1830 10 6 2.6447 -0.9701 -3.4056 11 6 3.2488 -0.1476 -4.5145 12 1 3.6335 0.8399 -4.3064 13 6 3.3113 -0.6562 -5.7945 14 7 2.8434 -1.8589 -6.0478 15 14 4.0608 0.3631 -7.1689 16 1 4.5109 1.6702 -6.6268 17 1 5.2231 -0.3604 -7.7443 18 1 3.0448 0.5892 -8.2280 19 1 -0.3633 0.6387 0.8051 20 1 -0.3634 0.3779 -0.9556 21 1 -0.3633 -1.0165 0.1505 22 1 3.2022 1.3496 0.1506 23 1 1.9174 1.8914 -0.9556 24 1 1.6770 1.9926 0.8051 25 1 4.0501 -0.6304 0.0195 26 1 3.4450 -2.3430 0.0280 27 1 3.2060 -1.8977 -3.2936 28 1 1.6072 -1.2002 -3.6482 29 1 2.8877 -2.2169 -6.9483 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238210878.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:26 Heat of formation + Delta-G solvation = -85.749231 kcal Electronic energy + Delta-G solvation = -12623.263053 eV Core-core repulsion = 10318.643535 eV Total energy + Delta-G solvation = -2304.619518 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.67600 -38.80015 -36.69403 -34.71659 -31.64450 -29.37794 -28.40249 -24.90038 -23.82631 -23.45337 -19.41720 -18.45567 -17.75228 -16.97532 -16.59782 -16.37319 -15.62113 -15.40717 -15.02918 -14.44908 -14.02639 -13.62477 -13.29161 -13.21400 -13.03213 -12.90668 -12.75819 -12.58799 -12.16589 -12.08084 -11.64155 -11.24583 -10.79463 -10.27975 -10.08370 -8.30458 -6.41944 0.71418 1.43048 1.43206 1.57897 2.35810 2.74044 3.04204 3.13026 3.37910 3.67115 3.83153 4.11386 4.23357 4.39726 4.64758 4.73690 4.76793 4.84096 4.91294 4.98696 5.01581 5.18517 5.21607 5.38816 5.58432 5.98039 6.34976 6.54263 6.83556 7.29912 8.81802 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.064275 B = 0.007678 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.525390 B = 3645.813372 C = 3729.680436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.131 4.131 3 C -0.109 4.109 4 C 0.382 3.618 5 O -0.448 6.448 6 C -0.205 4.205 7 C 0.066 3.934 8 H 0.087 0.913 9 O -0.372 6.372 10 C 0.207 3.793 11 C -0.544 4.544 12 H 0.065 0.935 13 C 0.008 3.992 14 N -0.931 5.931 15 Si 0.980 3.020 16 H -0.263 1.263 17 H -0.274 1.274 18 H -0.274 1.274 19 H 0.078 0.922 20 H 0.065 0.935 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.135 0.865 26 H 0.101 0.899 27 H -0.010 1.010 28 H -0.011 1.011 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.680 3.667 9.286 10.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 C -0.166 4.166 4 C 0.258 3.742 5 O -0.321 6.321 6 C -0.243 4.243 7 C 0.006 3.994 8 H 0.105 0.895 9 O -0.291 6.291 10 C 0.132 3.868 11 C -0.582 4.582 12 H 0.083 0.917 13 C -0.191 4.191 14 N -0.570 5.570 15 Si 0.803 3.197 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.200 1.200 19 H 0.097 0.903 20 H 0.084 0.916 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.152 0.848 26 H 0.119 0.881 27 H 0.007 0.993 28 H 0.007 0.993 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.760 3.568 9.776 10.555 hybrid contribution 0.164 -0.310 -0.980 1.041 sum -1.595 3.259 8.796 9.515 Atomic orbital electron populations 1.21676 0.91548 1.02620 1.03256 1.23330 0.98432 0.98395 0.93129 1.21326 1.00754 0.91380 1.03108 1.25309 0.85304 0.78796 0.84819 1.90368 1.68553 1.56293 1.16849 1.24449 1.00571 1.05033 0.94216 1.23138 0.95096 0.95060 0.86072 0.89482 1.87862 1.81068 1.43198 1.16966 1.19922 0.94369 0.91347 0.81162 1.21414 1.40487 1.02999 0.93296 0.91712 1.25897 0.95595 0.96368 1.01210 1.70067 1.46912 1.17712 1.22326 0.85182 0.78092 0.78663 0.77766 1.18662 1.19968 1.19955 0.90316 0.91567 0.92338 0.91884 0.91439 0.90379 0.84776 0.88063 0.99256 0.99309 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.16 71.98 0.66 -2.72 15 2 C -0.13 -3.75 1.34 -52.62 -0.07 -3.82 15 3 C -0.11 -2.85 8.48 71.98 0.61 -2.24 15 4 C 0.38 11.07 8.21 29.54 0.24 11.31 15 5 O -0.45 -14.70 17.99 -1.45 -0.03 -14.72 15 6 C -0.20 -5.91 7.44 30.16 0.22 -5.69 15 7 C 0.07 2.25 3.83 31.04 0.12 2.37 15 8 H 0.09 2.99 7.84 -2.39 -0.02 2.98 15 9 O -0.37 -16.47 9.42 -148.98 -1.40 -17.88 15 10 C 0.21 10.94 5.53 71.23 0.39 11.34 15 11 C -0.54 -30.92 9.43 25.60 0.24 -30.68 15 12 H 0.06 3.63 7.81 -2.91 -0.02 3.60 15 13 C 0.01 0.44 5.46 84.66 0.46 0.90 15 14 N -0.93 -54.42 13.29 21.45 0.28 -54.14 15 15 Si 0.98 43.04 29.54 68.60 2.03 45.06 15 16 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 19 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 20 H 0.07 1.73 8.14 -2.39 -0.02 1.71 15 21 H 0.06 1.42 8.09 -2.39 -0.02 1.41 15 22 H 0.06 1.62 7.21 -2.39 -0.02 1.60 15 23 H 0.07 1.97 7.94 -2.39 -0.02 1.95 15 24 H 0.08 1.67 8.14 -2.39 -0.02 1.65 15 25 H 0.13 3.65 7.52 -2.39 -0.02 3.64 15 26 H 0.10 2.69 8.14 -2.39 -0.02 2.67 15 27 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 15 28 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 15 29 H 0.27 14.65 8.31 -92.70 -0.77 13.88 15 Total: -1.00 -62.53 254.01 4.88 -57.64 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.12 Total: 3.27 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 2.88 Total: -19.24 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.28 Total: -54.14 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.43 Total: -32.60 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -62.53 4.88 -57.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238210878.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.107 kcal (2) G-P(sol) polarization free energy of solvation -62.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds