Wall clock time and date at job start Mon Mar 30 2020 20:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 112.90984 * 2 1 4 4 C 1.53776 * 113.61557 * 131.25111 * 2 1 3 5 5 H 1.09005 * 113.69026 * 334.55956 * 4 2 1 6 6 C 1.50702 * 113.61942 * 203.66651 * 4 2 1 7 7 H 1.08002 * 119.99446 * 2.99347 * 6 4 2 8 8 C 1.37871 * 120.00072 * 182.99974 * 6 4 2 9 9 N 1.31516 * 119.99826 * 179.72119 * 8 6 4 10 10 Si 1.86800 * 120.00406 * 359.97438 * 8 6 4 11 11 H 1.48501 * 109.46758 * 269.72576 * 10 8 6 12 12 H 1.48499 * 109.47026 * 29.72423 * 10 8 6 13 13 H 1.48496 * 109.47474 * 149.72459 * 10 8 6 14 14 C 1.53777 * 87.08012 * 89.11500 * 4 2 1 15 15 C 1.53779 * 113.61309 * 228.75099 * 2 1 3 16 16 H 1.09002 * 113.61701 * 156.33876 * 15 2 1 17 17 C 1.50693 * 113.69509 * 25.44156 * 15 2 1 18 18 O 1.20834 * 119.99852 * 2.96326 * 17 15 2 19 19 O 1.34226 * 120.00631 * 182.96133 * 17 15 2 20 20 H 1.09001 * 109.47293 * 288.75303 * 1 2 3 21 21 H 1.09004 * 109.46878 * 48.74469 * 1 2 3 22 22 H 1.08992 * 109.47587 * 168.74700 * 1 2 3 23 23 H 1.08994 * 109.47587 * 191.25301 * 3 2 1 24 24 H 1.09000 * 109.46857 * 311.25169 * 3 2 1 25 25 H 1.08995 * 109.47161 * 71.24743 * 3 2 1 26 26 H 0.96999 * 120.00128 * 180.27192 * 9 8 6 27 27 H 1.09005 * 113.61887 * 139.98418 * 14 4 2 28 28 H 1.09008 * 113.61618 * 270.79911 * 14 4 2 29 29 H 0.96697 * 117.00773 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9290 1.0593 5 1 1.4955 -1.1093 1.9152 6 6 3.5466 -0.5431 1.4598 7 1 4.0017 0.3442 1.0450 8 6 4.2470 -1.3227 2.3556 9 7 5.4713 -0.9888 2.7009 10 14 3.4597 -2.8570 3.0736 11 1 2.7452 -2.5063 4.3272 12 1 2.4956 -3.4224 2.0958 13 1 4.5125 -3.8620 3.3683 14 6 2.0929 -2.0425 0.0000 15 6 2.1459 -0.9290 -1.0594 16 1 3.1590 -0.6499 -1.3490 17 6 1.2468 -1.1783 -2.2427 18 8 0.1768 -0.6217 -2.3162 19 8 1.6343 -2.0185 -3.2151 20 1 -0.3634 0.3304 0.9731 21 1 -0.3633 0.6777 -0.7726 22 1 -0.3634 -1.0078 -0.2005 23 1 3.1954 1.3517 -0.2005 24 1 1.6428 2.0078 -0.7726 25 1 1.9627 1.8726 0.9731 26 1 5.9656 -1.5394 3.3281 27 1 2.9716 -2.6875 -0.0001 28 1 1.1573 -2.6019 0.0010 29 1 1.0240 -2.1462 -3.9541 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238233042.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:32 Heat of formation + Delta-G solvation = -77.994269 kcal Electronic energy + Delta-G solvation = -13234.361118 eV Core-core repulsion = 10930.077881 eV Total energy + Delta-G solvation = -2304.283238 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.48780 -38.17225 -35.65241 -32.38588 -30.02531 -27.80816 -26.78745 -24.04393 -21.61184 -21.00098 -17.84089 -17.46005 -16.55976 -15.79514 -15.12586 -14.46038 -13.71941 -13.44615 -13.25638 -12.64036 -12.26912 -12.08459 -11.63335 -11.28105 -11.10528 -10.90965 -10.78246 -10.59853 -10.16787 -9.98610 -9.74189 -9.37106 -8.95930 -8.83964 -8.55525 -6.10151 -4.10850 2.64158 3.28506 3.37827 3.42024 3.54014 4.41704 5.06621 5.19311 5.41478 5.58560 5.85108 5.87574 6.12555 6.23252 6.39203 6.48731 6.57086 6.60303 6.73013 6.78512 6.86387 6.93459 7.09592 7.16567 7.39464 7.75686 8.32960 8.50499 8.94823 9.52800 11.01476 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.042456 B = 0.012678 C = 0.011753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.351966 B = 2208.033953 C = 2381.706435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.061 4.061 3 C -0.121 4.121 4 C 0.019 3.981 5 H 0.036 0.964 6 C -0.505 4.505 7 H 0.085 0.915 8 C 0.075 3.925 9 N -0.898 5.898 10 Si 0.870 3.130 11 H -0.279 1.279 12 H -0.256 1.256 13 H -0.289 1.289 14 C -0.132 4.132 15 C -0.092 4.092 16 H 0.124 0.876 17 C 0.484 3.516 18 O -0.521 6.521 19 O -0.521 6.521 20 H 0.043 0.957 21 H 0.062 0.938 22 H 0.045 0.955 23 H 0.065 0.935 24 H 0.033 0.967 25 H 0.057 0.943 26 H 0.264 0.736 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.137 -1.328 -7.136 10.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.061 4.061 3 C -0.178 4.178 4 C 0.000 4.000 5 H 0.054 0.946 6 C -0.542 4.542 7 H 0.103 0.897 8 C -0.128 4.128 9 N -0.536 5.536 10 Si 0.697 3.303 11 H -0.205 1.205 12 H -0.180 1.180 13 H -0.216 1.216 14 C -0.170 4.170 15 C -0.111 4.111 16 H 0.142 0.858 17 C 0.328 3.672 18 O -0.409 6.409 19 O -0.332 6.332 20 H 0.062 0.938 21 H 0.081 0.919 22 H 0.064 0.936 23 H 0.084 0.916 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -6.989 -1.169 -6.703 9.754 hybrid contribution -0.664 -1.054 -0.146 1.254 sum -7.653 -2.223 -6.850 10.509 Atomic orbital electron populations 1.21638 0.93739 1.01528 1.00121 1.21796 0.94496 0.94762 0.95090 1.21614 1.00961 0.94697 1.00559 1.20342 0.97263 0.90704 0.91722 0.94576 1.20859 0.96099 1.11692 1.25563 0.89701 1.24967 0.94585 0.97465 0.95742 1.69894 1.10604 1.39117 1.33962 0.86963 0.79602 0.83595 0.80114 1.20460 1.18042 1.21566 1.23316 1.00467 0.96525 0.96695 1.22702 0.98907 1.01811 0.87633 0.85849 1.24247 0.86279 0.74066 0.82602 1.90657 1.24333 1.48407 1.77532 1.84662 1.52569 1.62423 1.33520 0.93829 0.91920 0.93556 0.91597 0.94771 0.92383 0.92613 0.90836 0.92432 0.74665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 7.33 37.16 0.27 -1.80 15 2 C -0.06 -1.21 1.22 -153.70 -0.19 -1.40 15 3 C -0.12 -2.30 8.25 37.16 0.31 -2.00 15 4 C 0.02 0.42 2.44 -90.96 -0.22 0.20 15 5 H 0.04 0.83 7.23 -51.93 -0.38 0.45 15 6 C -0.50 -13.22 8.52 -34.44 -0.29 -13.51 15 7 H 0.09 2.36 5.93 -52.49 -0.31 2.05 15 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 15 9 N -0.90 -26.43 13.96 55.43 0.77 -25.65 15 10 Si 0.87 20.70 26.75 -169.99 -4.55 16.15 15 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 12 H -0.26 -5.74 5.85 56.52 0.33 -5.41 15 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 14 C -0.13 -2.71 5.33 -25.92 -0.14 -2.84 15 15 C -0.09 -1.75 3.47 -90.96 -0.32 -2.07 15 16 H 0.12 2.39 7.96 -51.93 -0.41 1.97 15 17 C 0.48 8.42 7.53 36.00 0.27 8.69 15 18 O -0.52 -9.73 13.58 -18.76 -0.25 -9.99 15 19 O -0.52 -7.51 13.42 -39.25 -0.53 -8.03 15 20 H 0.04 0.75 8.14 -51.93 -0.42 0.32 15 21 H 0.06 1.13 6.90 -51.93 -0.36 0.78 15 22 H 0.05 0.85 6.43 -51.93 -0.33 0.51 15 23 H 0.07 1.31 6.32 -51.93 -0.33 0.98 15 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 27 H 0.07 1.57 7.50 -51.93 -0.39 1.18 15 28 H 0.06 1.11 7.61 -51.92 -0.40 0.71 15 29 H 0.40 3.70 9.10 45.56 0.41 4.12 15 LS Contribution 235.05 15.07 3.54 3.54 Total: -1.00 -29.63 235.05 -4.38 -34.01 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -2.96 Total: 2.75 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.40 Total: -12.78 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.77 Total: -25.65 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.78 Total: -18.02 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.55 Total: 16.15 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -29.63 -4.38 -34.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238233042.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.982 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds