Wall clock time and date at job start Mon Mar 30 2020 20:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 112.90984 * 2 1 4 4 C 1.53776 * 113.61557 * 131.25111 * 2 1 3 5 5 H 1.09005 * 113.69026 * 334.55956 * 4 2 1 6 6 C 1.50702 * 113.61942 * 203.66651 * 4 2 1 7 7 H 1.08002 * 119.99446 * 2.99347 * 6 4 2 8 8 C 1.37871 * 120.00072 * 182.99974 * 6 4 2 9 9 N 1.31516 * 119.99826 * 179.72119 * 8 6 4 10 10 Si 1.86800 * 120.00406 * 359.97438 * 8 6 4 11 11 H 1.48501 * 109.46758 * 269.72576 * 10 8 6 12 12 H 1.48499 * 109.47026 * 29.72423 * 10 8 6 13 13 H 1.48496 * 109.47474 * 149.72459 * 10 8 6 14 14 C 1.53777 * 87.08012 * 89.11500 * 4 2 1 15 15 C 1.53779 * 113.61309 * 228.75099 * 2 1 3 16 16 H 1.09002 * 113.61701 * 156.33876 * 15 2 1 17 17 C 1.50693 * 113.69509 * 25.44156 * 15 2 1 18 18 O 1.20834 * 119.99852 * 2.96326 * 17 15 2 19 19 O 1.34226 * 120.00631 * 182.96133 * 17 15 2 20 20 H 1.09001 * 109.47293 * 288.75303 * 1 2 3 21 21 H 1.09004 * 109.46878 * 48.74469 * 1 2 3 22 22 H 1.08992 * 109.47587 * 168.74700 * 1 2 3 23 23 H 1.08994 * 109.47587 * 191.25301 * 3 2 1 24 24 H 1.09000 * 109.46857 * 311.25169 * 3 2 1 25 25 H 1.08995 * 109.47161 * 71.24743 * 3 2 1 26 26 H 0.96999 * 120.00128 * 180.27192 * 9 8 6 27 27 H 1.09005 * 113.61887 * 139.98418 * 14 4 2 28 28 H 1.09008 * 113.61618 * 270.79911 * 14 4 2 29 29 H 0.96697 * 117.00773 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9290 1.0593 5 1 1.4955 -1.1093 1.9152 6 6 3.5466 -0.5431 1.4598 7 1 4.0017 0.3442 1.0450 8 6 4.2470 -1.3227 2.3556 9 7 5.4713 -0.9888 2.7009 10 14 3.4597 -2.8570 3.0736 11 1 2.7452 -2.5063 4.3272 12 1 2.4956 -3.4224 2.0958 13 1 4.5125 -3.8620 3.3683 14 6 2.0929 -2.0425 0.0000 15 6 2.1459 -0.9290 -1.0594 16 1 3.1590 -0.6499 -1.3490 17 6 1.2468 -1.1783 -2.2427 18 8 0.1768 -0.6217 -2.3162 19 8 1.6343 -2.0185 -3.2151 20 1 -0.3634 0.3304 0.9731 21 1 -0.3633 0.6777 -0.7726 22 1 -0.3634 -1.0078 -0.2005 23 1 3.1954 1.3517 -0.2005 24 1 1.6428 2.0078 -0.7726 25 1 1.9627 1.8726 0.9731 26 1 5.9656 -1.5394 3.3281 27 1 2.9716 -2.6875 -0.0001 28 1 1.1573 -2.6019 0.0010 29 1 1.0240 -2.1462 -3.9541 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238233042.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:32 Heat of formation + Delta-G solvation = -97.569184 kcal Electronic energy + Delta-G solvation = -13235.209950 eV Core-core repulsion = 10930.077881 eV Total energy + Delta-G solvation = -2305.132070 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.94537 -39.64130 -36.94466 -34.44421 -31.59511 -29.60404 -28.28501 -25.80423 -23.24821 -22.47580 -19.48783 -18.93206 -18.29781 -17.27912 -16.59722 -16.28434 -15.28160 -15.13440 -14.74627 -14.38071 -13.88079 -13.72596 -13.16673 -12.90159 -12.65610 -12.50564 -12.41694 -12.17888 -11.81526 -11.72277 -11.47671 -11.02106 -10.73591 -10.56890 -10.50006 -8.20591 -6.24313 1.27630 1.40431 1.44581 1.55038 2.28339 2.43167 3.12413 3.55300 3.80342 4.05284 4.24204 4.50188 4.57755 4.68696 4.90036 4.93904 5.02279 5.09761 5.16152 5.24191 5.31268 5.39391 5.55228 5.67966 5.78303 5.83414 6.44106 6.84774 7.13462 7.42345 8.94090 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.042456 B = 0.012678 C = 0.011753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.351966 B = 2208.033953 C = 2381.706435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.060 4.060 3 C -0.117 4.117 4 C 0.004 3.996 5 H 0.036 0.964 6 C -0.497 4.497 7 H 0.056 0.944 8 C 0.016 3.984 9 N -0.949 5.949 10 Si 0.928 3.072 11 H -0.277 1.277 12 H -0.232 1.232 13 H -0.293 1.293 14 C -0.126 4.126 15 C -0.091 4.091 16 H 0.114 0.886 17 C 0.495 3.505 18 O -0.532 6.532 19 O -0.514 6.514 20 H 0.051 0.949 21 H 0.066 0.934 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.263 0.737 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.072 -2.307 -8.147 12.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.060 4.060 3 C -0.175 4.175 4 C -0.015 4.015 5 H 0.054 0.946 6 C -0.534 4.534 7 H 0.074 0.926 8 C -0.181 4.181 9 N -0.589 5.589 10 Si 0.753 3.247 11 H -0.203 1.203 12 H -0.154 1.154 13 H -0.220 1.220 14 C -0.164 4.164 15 C -0.110 4.110 16 H 0.132 0.868 17 C 0.340 3.660 18 O -0.422 6.422 19 O -0.328 6.328 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -8.952 -2.156 -7.755 12.039 hybrid contribution -0.040 -0.684 0.084 0.690 sum -8.992 -2.840 -7.672 12.156 Atomic orbital electron populations 1.21561 0.92060 1.01747 1.00781 1.21785 0.95637 0.94512 0.94035 1.21551 0.99994 0.94967 1.00947 1.20307 0.95109 0.93194 0.92869 0.94569 1.21084 0.97717 1.10255 1.24391 0.92620 1.25765 0.94960 1.00762 0.96598 1.70038 1.12454 1.40877 1.35565 0.86023 0.79005 0.79900 0.79774 1.20269 1.15419 1.21998 1.23186 1.00997 0.96140 0.96056 1.22490 0.98990 1.00841 0.88648 0.86786 1.23587 0.85433 0.74343 0.82684 1.90662 1.24595 1.49021 1.77961 1.84575 1.53244 1.61121 1.33860 0.92981 0.91542 0.93418 0.93430 0.92627 0.92982 0.92778 0.91889 0.90395 0.71643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.51 7.33 71.98 0.53 -2.98 15 2 C -0.06 -2.24 1.22 -51.66 -0.06 -2.31 15 3 C -0.12 -4.37 8.25 71.98 0.59 -3.78 15 4 C 0.00 0.18 2.44 -11.02 -0.03 0.15 15 5 H 0.04 1.58 7.23 -2.38 -0.02 1.57 15 6 C -0.50 -26.30 8.52 25.60 0.22 -26.08 15 7 H 0.06 3.21 5.93 -2.91 -0.02 3.19 15 8 C 0.02 0.90 5.47 84.65 0.46 1.36 15 9 N -0.95 -57.36 13.96 21.45 0.30 -57.06 15 10 Si 0.93 42.35 26.75 68.60 1.83 44.19 15 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 12 H -0.23 -9.51 5.85 99.48 0.58 -8.93 15 13 H -0.29 -13.50 7.11 99.48 0.71 -12.79 15 14 C -0.13 -4.86 5.33 31.12 0.17 -4.70 15 15 C -0.09 -3.29 3.47 -11.02 -0.04 -3.33 15 16 H 0.11 4.33 7.96 -2.39 -0.02 4.31 15 17 C 0.50 15.68 7.53 71.23 0.54 16.22 15 18 O -0.53 -18.09 13.58 21.94 0.30 -17.79 15 19 O -0.51 -12.97 13.42 -51.38 -0.69 -13.66 15 20 H 0.05 1.64 8.14 -2.39 -0.02 1.62 15 21 H 0.07 2.20 6.90 -2.39 -0.02 2.18 15 22 H 0.05 1.58 6.43 -2.39 -0.02 1.56 15 23 H 0.05 1.92 6.32 -2.39 -0.02 1.90 15 24 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 15 26 H 0.26 15.07 8.31 -92.71 -0.77 14.30 15 27 H 0.06 2.56 7.50 -2.38 -0.02 2.54 15 28 H 0.08 2.71 7.61 -2.38 -0.02 2.69 15 29 H 0.42 6.13 9.10 -74.06 -0.67 5.46 15 Total: -1.00 -62.68 235.05 4.48 -58.21 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.36 Total: 11.56 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 2.38 Total: -25.45 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.30 Total: -57.06 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.39 Total: -31.45 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.83 Total: 44.19 kcal Total: -62.68 4.48 -58.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238233042.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.363 kcal (2) G-P(sol) polarization free energy of solvation -62.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds