Wall clock time and date at job start Mon Mar 30 2020 20:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46998 * 2 1 4 4 H 1.09004 * 109.50491 * 304.91967 * 3 2 1 5 5 C 1.53367 * 109.54050 * 184.82355 * 3 2 1 6 6 C 1.51606 * 108.12160 * 187.77945 * 5 3 2 7 7 O 1.20764 * 121.27092 * 228.43924 * 6 5 3 8 8 C 1.51506 * 117.51150 * 48.39146 * 6 5 3 9 9 H 1.09000 * 109.73687 * 191.92171 * 8 6 5 10 10 C 1.50706 * 109.73521 * 71.27552 * 8 6 5 11 11 H 1.08005 * 119.99758 * 240.65508 * 10 8 6 12 12 C 1.37871 * 120.00102 * 60.65392 * 10 8 6 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47483 * 269.99808 * 14 12 10 16 16 H 1.48499 * 109.47134 * 30.00322 * 14 12 10 17 17 H 1.48507 * 109.46904 * 150.00145 * 14 12 10 18 18 C 1.53362 * 108.13772 * 311.60005 * 8 6 5 19 19 O 1.42888 * 109.27565 * 52.27693 * 18 8 6 20 20 H 1.09001 * 109.47225 * 299.99719 * 1 2 3 21 21 H 1.08996 * 109.47363 * 60.00143 * 1 2 3 22 22 H 1.08997 * 109.46984 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47225 * 240.00281 * 2 1 3 24 24 H 1.08996 * 109.47363 * 119.99857 * 2 1 3 25 25 H 1.08997 * 109.73261 * 307.43358 * 5 3 2 26 26 H 1.09002 * 109.73677 * 68.12820 * 5 3 2 27 27 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 28 28 H 1.08995 * 109.50190 * 172.21756 * 18 8 6 29 29 H 1.09003 * 109.50189 * 292.33963 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6067 1.9817 -0.8425 5 6 3.5688 1.4461 -0.1215 6 6 4.0541 2.8688 0.0756 7 8 4.8406 3.3744 -0.6887 8 6 3.5147 3.6335 1.2671 9 1 3.7715 4.6887 1.1741 10 6 4.1031 3.0768 2.5379 11 1 3.4560 2.6578 3.2944 12 6 5.4675 3.1023 2.7349 13 7 6.2554 3.6129 1.8140 14 14 6.1967 2.4128 4.3104 15 1 6.2795 3.4892 5.3301 16 1 5.3330 1.3163 4.8172 17 1 7.5574 1.8848 4.0364 18 6 1.9898 3.4713 1.2879 19 8 1.6623 2.0821 1.2207 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 4.0003 0.8008 0.6436 26 1 3.8603 1.0916 -1.1102 27 1 5.8767 3.9712 0.9960 28 1 1.5914 3.8950 2.2097 29 1 1.5571 3.9891 0.4318 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259537436.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:29:37 Heat of formation + Delta-G solvation = -127.061711 kcal Electronic energy + Delta-G solvation = -13246.491046 eV Core-core repulsion = 10940.080085 eV Total energy + Delta-G solvation = -2306.410962 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.15462 -38.87253 -35.78325 -34.58800 -32.13980 -30.99113 -26.54804 -25.29499 -24.43832 -22.04491 -20.69635 -18.73776 -17.47643 -17.17710 -16.55110 -16.03940 -15.63758 -15.60945 -14.85978 -14.55088 -14.26008 -13.87571 -13.46200 -13.04513 -12.97123 -12.64170 -12.36363 -12.14741 -11.92657 -11.85739 -11.43221 -10.98942 -10.73499 -10.45035 -10.20252 -8.66622 -6.47609 1.13852 1.51905 1.60783 1.78138 2.53442 2.81146 3.07585 3.36509 3.78779 3.93366 4.07675 4.29156 4.33510 4.35957 4.46266 4.58403 4.67787 4.83957 4.95768 5.05891 5.12752 5.14707 5.30215 5.50809 5.80371 6.13770 6.32393 6.48085 6.68448 7.33929 8.70752 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.039150 B = 0.012750 C = 0.011452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.027288 B = 2195.570174 C = 2444.487003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C 0.101 3.899 4 H 0.066 0.934 5 C -0.185 4.185 6 C 0.357 3.643 7 O -0.519 6.519 8 C -0.059 4.059 9 H 0.015 0.985 10 C -0.587 4.587 11 H 0.069 0.931 12 C -0.037 4.037 13 N -0.943 5.943 14 Si 1.118 2.882 15 H -0.271 1.271 16 H -0.261 1.261 17 H -0.289 1.289 18 C 0.093 3.907 19 O -0.373 6.373 20 H 0.050 0.950 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.096 0.904 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.271 0.729 28 H 0.104 0.896 29 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.992 -7.160 -1.750 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C 0.043 3.957 4 H 0.084 0.916 5 C -0.223 4.223 6 C 0.237 3.763 7 O -0.398 6.398 8 C -0.079 4.079 9 H 0.033 0.967 10 C -0.624 4.624 11 H 0.087 0.913 12 C -0.236 4.236 13 N -0.581 5.581 14 Si 0.939 3.061 15 H -0.196 1.196 16 H -0.186 1.186 17 H -0.216 1.216 18 C 0.016 3.984 19 O -0.292 6.292 20 H 0.069 0.931 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.114 0.886 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.297 -7.251 -1.224 11.854 hybrid contribution -0.679 0.906 -1.137 1.604 sum -9.976 -6.345 -2.360 12.056 Atomic orbital electron populations 1.21679 0.93902 1.02481 1.02043 1.21577 0.97666 0.91971 1.03578 1.22260 0.89799 0.96411 0.87273 0.91574 1.22919 0.99943 0.95392 1.04061 1.26075 0.76767 0.91172 0.82236 1.90228 1.30406 1.73062 1.46085 1.20425 0.97133 0.95625 0.94719 0.96684 1.21939 0.94591 1.44087 1.01792 0.91257 1.27495 0.95156 0.95135 1.05835 1.70789 1.40028 1.37731 1.09595 0.82936 0.75211 0.76823 0.71137 1.19626 1.18569 1.21552 1.22467 0.91560 0.82269 1.02113 1.87825 1.80251 1.22787 1.38352 0.93121 0.92211 0.90951 0.88608 0.91450 0.88679 0.88572 0.91692 0.87759 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.81 71.98 0.71 -2.28 15 2 C -0.11 -2.73 5.65 30.59 0.17 -2.56 15 3 C 0.10 3.27 2.64 30.72 0.08 3.35 15 4 H 0.07 1.96 8.13 -2.38 -0.02 1.94 15 5 C -0.19 -7.34 5.57 30.26 0.17 -7.17 15 6 C 0.36 17.99 5.12 29.65 0.15 18.14 15 7 O -0.52 -29.59 16.10 -1.46 -0.02 -29.61 15 8 C -0.06 -3.02 2.31 -11.91 -0.03 -3.05 15 9 H 0.02 0.85 8.01 -2.39 -0.02 0.83 15 10 C -0.59 -32.19 8.28 25.60 0.21 -31.98 15 11 H 0.07 3.69 7.75 -2.91 -0.02 3.67 15 12 C -0.04 -2.11 5.31 84.65 0.45 -1.67 15 13 N -0.94 -60.31 13.39 21.45 0.29 -60.02 15 14 Si 1.12 50.06 29.90 68.60 2.05 52.11 15 15 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 16 H -0.26 -10.57 7.11 99.48 0.71 -9.87 15 17 H -0.29 -13.14 7.11 99.48 0.71 -12.43 15 18 C 0.09 3.67 6.18 72.10 0.45 4.12 15 19 O -0.37 -14.05 9.68 -148.98 -1.44 -15.49 15 20 H 0.05 1.19 7.82 -2.39 -0.02 1.17 15 21 H 0.06 1.12 8.14 -2.39 -0.02 1.10 15 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 15 23 H 0.10 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 25 H 0.09 3.99 8.14 -2.39 -0.02 3.97 15 26 H 0.10 3.37 8.14 -2.39 -0.02 3.35 15 27 H 0.27 17.90 4.86 -92.71 -0.45 17.45 15 28 H 0.10 3.87 8.14 -2.39 -0.02 3.85 15 29 H 0.05 1.83 8.13 -2.39 -0.02 1.81 15 Total: -1.00 -69.77 242.96 4.67 -65.10 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 1.44 Total: 11.00 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 2.36 Total: -23.09 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.29 Total: -60.02 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -1.47 Total: -45.10 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.05 Total: 52.11 kcal Total: -69.77 4.67 -65.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259537436.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.962 kcal (2) G-P(sol) polarization free energy of solvation -69.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds