Wall clock time and date at job start Mon Mar 30 2020 20:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47104 * 2 1 4 4 H 1.09002 * 109.50590 * 304.91693 * 3 2 1 5 5 C 1.53363 * 109.50418 * 184.80079 * 3 2 1 6 6 C 1.51509 * 108.09786 * 187.80071 * 5 3 2 7 7 O 1.20763 * 121.21431 * 228.46136 * 6 5 3 8 8 C 1.51603 * 117.58903 * 48.41664 * 6 5 3 9 9 H 1.09003 * 109.73206 * 71.22000 * 8 6 5 10 10 C 1.50698 * 109.78809 * 191.94935 * 8 6 5 11 11 H 1.07999 * 119.99668 * 118.61498 * 10 8 6 12 12 C 1.37876 * 120.00253 * 298.61885 * 10 8 6 13 13 N 1.31511 * 120.00460 * 179.97438 * 12 10 8 14 14 Si 1.86809 * 119.99564 * 359.97438 * 12 10 8 15 15 H 1.48498 * 109.46839 * 90.00658 * 14 12 10 16 16 H 1.48504 * 109.46719 * 209.99961 * 14 12 10 17 17 H 1.48498 * 109.47238 * 330.00299 * 14 12 10 18 18 C 1.53365 * 108.04778 * 311.60280 * 8 6 5 19 19 O 1.42888 * 109.50719 * 64.99865 * 3 2 1 20 20 H 1.08995 * 109.47430 * 300.00379 * 1 2 3 21 21 H 1.09005 * 109.46997 * 60.00438 * 1 2 3 22 22 H 1.09000 * 109.47409 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46724 * 239.99760 * 2 1 3 24 24 H 1.08995 * 109.46539 * 119.99876 * 2 1 3 25 25 H 1.08998 * 109.73499 * 307.45302 * 5 3 2 26 26 H 1.09001 * 109.73557 * 68.10648 * 5 3 2 27 27 H 0.97000 * 120.00206 * 179.97438 * 13 12 10 28 28 H 1.09002 * 109.50444 * 292.28010 * 18 8 6 29 29 H 1.09003 * 109.49916 * 172.20219 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6069 1.9816 -0.8425 5 6 3.5689 1.4450 -0.1210 6 6 4.0542 2.8666 0.0765 7 8 4.8409 3.3713 -0.6882 8 6 3.5157 3.6331 1.2685 9 1 3.9406 3.2300 2.1878 10 6 3.8709 5.0920 1.1397 11 1 3.0892 5.8346 1.0776 12 6 5.1937 5.4787 1.1010 13 7 5.5037 6.7518 0.9881 14 14 6.5458 4.1942 1.2091 15 1 6.8992 3.7315 -0.1570 16 1 7.7432 4.7891 1.8554 17 1 6.0699 3.0411 2.0147 18 6 1.9908 3.4710 1.2881 19 8 1.6624 2.0820 1.2207 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.9997 0.7993 0.6441 26 1 3.8605 1.0898 -1.1094 27 1 6.4344 7.0238 0.9613 28 1 1.5587 3.9892 0.4320 29 1 1.5917 3.8950 2.2096 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259537437.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:29:41 Heat of formation + Delta-G solvation = -91.153195 kcal Electronic energy + Delta-G solvation = -13159.715920 eV Core-core repulsion = 10854.862069 eV Total energy + Delta-G solvation = -2304.853851 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.54123 -37.31848 -34.01063 -32.71955 -30.81394 -29.89492 -25.28737 -23.93123 -22.01053 -20.93748 -18.55665 -17.17541 -16.10029 -15.52317 -14.86835 -14.62769 -14.04722 -13.71746 -13.58221 -13.28275 -12.77193 -12.56735 -12.01100 -11.83947 -11.39014 -10.99288 -10.92605 -10.73695 -10.24332 -10.02044 -9.76364 -9.48364 -9.00307 -8.71080 -8.26234 -6.08514 -4.15610 2.81152 3.34442 3.46458 3.54228 4.13762 4.48400 4.76934 4.96759 5.13595 5.26431 5.42597 5.44383 5.60255 5.68753 5.89984 5.96619 6.00682 6.06076 6.10346 6.20997 6.29377 6.37328 6.74291 6.96940 7.41411 7.77606 8.31830 8.52279 8.87081 9.52451 11.01657 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.060690 B = 0.011798 C = 0.010666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.252917 B = 2372.670685 C = 2624.474165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.101 3.899 4 H 0.059 0.941 5 C -0.206 4.206 6 C 0.328 3.672 7 O -0.430 6.430 8 C -0.059 4.059 9 H 0.067 0.933 10 C -0.524 4.524 11 H 0.079 0.921 12 C 0.091 3.909 13 N -0.893 5.893 14 Si 0.890 3.110 15 H -0.260 1.260 16 H -0.301 1.301 17 H -0.277 1.277 18 C 0.084 3.916 19 O -0.386 6.386 20 H 0.064 0.936 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.266 0.734 28 H 0.049 0.951 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.099 -12.675 -0.940 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.043 3.957 4 H 0.077 0.923 5 C -0.245 4.245 6 C 0.203 3.797 7 O -0.302 6.302 8 C -0.078 4.078 9 H 0.085 0.915 10 C -0.561 4.561 11 H 0.097 0.903 12 C -0.113 4.113 13 N -0.529 5.529 14 Si 0.721 3.279 15 H -0.186 1.186 16 H -0.230 1.230 17 H -0.203 1.203 18 C 0.008 3.992 19 O -0.305 6.305 20 H 0.083 0.917 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.114 0.886 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.638 -12.352 -1.222 14.076 hybrid contribution 1.033 -0.465 -0.189 1.149 sum -5.605 -12.817 -1.411 14.060 Atomic orbital electron populations 1.21713 0.95318 1.01138 1.02453 1.21558 0.96624 0.94520 1.02537 1.21990 0.91586 0.94074 0.88060 0.92339 1.23172 0.98390 0.99081 1.03829 1.25961 0.78575 0.87957 0.87203 1.90258 1.26683 1.70354 1.42949 1.20540 0.94504 0.98336 0.94434 0.91516 1.20537 0.93780 0.88562 1.53192 0.90288 1.24946 0.98740 0.95169 0.92454 1.69877 1.18693 1.15385 1.48969 0.86759 0.81278 0.81504 0.78381 1.18634 1.22968 1.20297 1.22630 0.94632 0.79704 1.02223 1.87791 1.81341 1.24354 1.37048 0.91704 0.93011 0.93060 0.90907 0.91045 0.88642 0.89818 0.92473 0.93229 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.81 37.16 0.36 -1.25 15 2 C -0.11 -1.37 5.65 -26.73 -0.15 -1.52 15 3 C 0.10 1.57 2.64 -26.55 -0.07 1.50 15 4 H 0.06 0.90 8.13 -51.93 -0.42 0.48 15 5 C -0.21 -3.56 5.68 -27.30 -0.16 -3.72 15 6 C 0.33 7.51 5.33 -28.19 -0.15 7.36 15 7 O -0.43 -11.38 12.67 6.00 0.08 -11.30 15 8 C -0.06 -1.38 2.16 -92.29 -0.20 -1.58 15 9 H 0.07 1.58 7.16 -51.93 -0.37 1.21 15 10 C -0.52 -14.92 8.90 -34.44 -0.31 -15.23 15 11 H 0.08 2.37 8.00 -52.49 -0.42 1.95 15 12 C 0.09 2.73 5.16 -17.82 -0.09 2.64 15 13 N -0.89 -28.09 13.96 55.43 0.77 -27.32 15 14 Si 0.89 23.69 24.16 -169.99 -4.11 19.58 15 15 H -0.26 -7.12 6.25 56.52 0.35 -6.76 15 16 H -0.30 -7.89 7.11 56.52 0.40 -7.49 15 17 H -0.28 -6.94 6.52 56.52 0.37 -6.57 15 18 C 0.08 1.64 6.10 37.35 0.23 1.87 15 19 O -0.39 -6.77 9.86 -35.23 -0.35 -7.11 15 20 H 0.06 0.77 7.82 -51.93 -0.41 0.36 15 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 15 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 25 H 0.10 1.52 8.14 -51.93 -0.42 1.10 15 26 H 0.08 1.31 8.14 -51.93 -0.42 0.88 15 27 H 0.27 7.87 8.31 -40.82 -0.34 7.53 15 28 H 0.05 0.96 8.12 -51.93 -0.42 0.54 15 29 H 0.10 1.79 8.14 -51.93 -0.42 1.36 15 LS Contribution 236.50 15.07 3.56 3.56 Total: -1.00 -32.24 236.50 -4.79 -37.03 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: -4.22 Total: -4.51 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -0.53 Total: -9.93 kcal Atomic # 7 Polarization: -28.09 SS G_CDS: 0.77 Total: -27.32 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.27 Total: -18.42 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -4.11 Total: 19.58 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.24 -4.79 -37.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259537437.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.123 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds