Wall clock time and date at job start Mon Mar 30 2020 20:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47104 * 2 1 4 4 H 1.09002 * 109.50590 * 304.91693 * 3 2 1 5 5 C 1.53363 * 109.50418 * 184.80079 * 3 2 1 6 6 C 1.51509 * 108.09786 * 187.80071 * 5 3 2 7 7 O 1.20763 * 121.21431 * 228.46136 * 6 5 3 8 8 C 1.51603 * 117.58903 * 48.41664 * 6 5 3 9 9 H 1.09003 * 109.73206 * 71.22000 * 8 6 5 10 10 C 1.50698 * 109.78809 * 191.94935 * 8 6 5 11 11 H 1.07999 * 119.99668 * 118.61498 * 10 8 6 12 12 C 1.37876 * 120.00253 * 298.61885 * 10 8 6 13 13 N 1.31511 * 120.00460 * 179.97438 * 12 10 8 14 14 Si 1.86809 * 119.99564 * 359.97438 * 12 10 8 15 15 H 1.48498 * 109.46839 * 90.00658 * 14 12 10 16 16 H 1.48504 * 109.46719 * 209.99961 * 14 12 10 17 17 H 1.48498 * 109.47238 * 330.00299 * 14 12 10 18 18 C 1.53365 * 108.04778 * 311.60280 * 8 6 5 19 19 O 1.42888 * 109.50719 * 64.99865 * 3 2 1 20 20 H 1.08995 * 109.47430 * 300.00379 * 1 2 3 21 21 H 1.09005 * 109.46997 * 60.00438 * 1 2 3 22 22 H 1.09000 * 109.47409 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46724 * 239.99760 * 2 1 3 24 24 H 1.08995 * 109.46539 * 119.99876 * 2 1 3 25 25 H 1.08998 * 109.73499 * 307.45302 * 5 3 2 26 26 H 1.09001 * 109.73557 * 68.10648 * 5 3 2 27 27 H 0.97000 * 120.00206 * 179.97438 * 13 12 10 28 28 H 1.09002 * 109.50444 * 292.28010 * 18 8 6 29 29 H 1.09003 * 109.49916 * 172.20219 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6069 1.9816 -0.8425 5 6 3.5689 1.4450 -0.1210 6 6 4.0542 2.8666 0.0765 7 8 4.8409 3.3713 -0.6882 8 6 3.5157 3.6331 1.2685 9 1 3.9406 3.2300 2.1878 10 6 3.8709 5.0920 1.1397 11 1 3.0892 5.8346 1.0776 12 6 5.1937 5.4787 1.1010 13 7 5.5037 6.7518 0.9881 14 14 6.5458 4.1942 1.2091 15 1 6.8992 3.7315 -0.1570 16 1 7.7432 4.7891 1.8554 17 1 6.0699 3.0411 2.0147 18 6 1.9908 3.4710 1.2881 19 8 1.6624 2.0820 1.2207 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.9997 0.7993 0.6441 26 1 3.8605 1.0898 -1.1094 27 1 6.4344 7.0238 0.9613 28 1 1.5587 3.9892 0.4320 29 1 1.5917 3.8950 2.2096 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259537437.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:29:40 Heat of formation + Delta-G solvation = -114.057510 kcal Electronic energy + Delta-G solvation = -13160.709126 eV Core-core repulsion = 10854.862069 eV Total energy + Delta-G solvation = -2305.847057 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.18921 -38.93277 -35.52375 -34.51985 -32.65012 -31.24367 -27.10759 -25.24337 -23.81540 -22.04563 -20.29368 -19.28237 -17.52683 -17.12988 -16.64862 -16.26634 -15.91097 -15.36740 -14.95138 -14.77713 -14.41526 -14.00323 -13.70293 -13.13924 -12.98570 -12.33047 -12.27292 -12.10692 -11.93975 -11.79001 -11.60912 -11.28146 -10.93388 -10.52983 -10.14637 -8.37657 -6.46822 0.98752 1.20786 1.39058 1.41776 2.30128 2.79586 2.94419 3.36211 3.77206 3.96953 4.11555 4.31737 4.33561 4.37935 4.49039 4.63819 4.71725 4.87336 5.03891 5.06490 5.17420 5.19845 5.31446 5.42430 5.54012 6.04279 6.30394 6.57866 6.70981 7.23877 8.75964 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.060690 B = 0.011798 C = 0.010666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.252917 B = 2372.670685 C = 2624.474165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C 0.094 3.906 4 H 0.059 0.941 5 C -0.194 4.194 6 C 0.323 3.677 7 O -0.473 6.473 8 C -0.071 4.071 9 H 0.073 0.927 10 C -0.524 4.524 11 H 0.047 0.953 12 C 0.034 3.966 13 N -0.941 5.941 14 Si 0.943 3.057 15 H -0.273 1.273 16 H -0.299 1.299 17 H -0.250 1.250 18 C 0.096 3.904 19 O -0.381 6.381 20 H 0.050 0.950 21 H 0.053 0.947 22 H 0.071 0.929 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.119 0.881 26 H 0.106 0.894 27 H 0.266 0.734 28 H 0.044 0.956 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.798 -15.811 -0.884 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C 0.036 3.964 4 H 0.077 0.923 5 C -0.232 4.232 6 C 0.202 3.798 7 O -0.350 6.350 8 C -0.090 4.090 9 H 0.090 0.910 10 C -0.561 4.561 11 H 0.065 0.935 12 C -0.165 4.165 13 N -0.580 5.580 14 Si 0.772 3.228 15 H -0.199 1.199 16 H -0.228 1.228 17 H -0.174 1.174 18 C 0.019 3.981 19 O -0.300 6.300 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.090 0.910 23 H 0.115 0.885 24 H 0.096 0.904 25 H 0.137 0.863 26 H 0.124 0.876 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.373 -15.524 -1.143 17.224 hybrid contribution 1.138 0.524 -0.227 1.273 sum -6.235 -15.000 -1.370 16.302 Atomic orbital electron populations 1.21713 0.94616 1.02382 1.01900 1.21586 0.97185 0.91712 1.04097 1.22324 0.90515 0.96338 0.87248 0.92310 1.23147 0.99350 0.94743 1.05975 1.26307 0.77311 0.90460 0.85758 1.90246 1.28670 1.71849 1.44199 1.20621 0.97593 0.95398 0.95401 0.90953 1.20873 0.92819 0.91019 1.51389 0.93456 1.25754 1.01262 0.96743 0.92722 1.70000 1.19133 1.17334 1.51572 0.85871 0.78807 0.80163 0.77987 1.19942 1.22772 1.17389 1.22403 0.91691 0.81236 1.02734 1.87820 1.80997 1.22842 1.38307 0.93060 0.92836 0.90965 0.88461 0.90362 0.86342 0.87592 0.92488 0.93749 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.81 71.98 0.71 -1.94 15 2 C -0.11 -2.08 5.65 30.59 0.17 -1.91 15 3 C 0.09 2.56 2.64 30.71 0.08 2.64 15 4 H 0.06 1.63 8.13 -2.39 -0.02 1.61 15 5 C -0.19 -5.94 5.68 30.23 0.17 -5.77 15 6 C 0.32 14.19 5.33 29.65 0.16 14.35 15 7 O -0.47 -24.70 12.67 -1.46 -0.02 -24.72 15 8 C -0.07 -3.25 2.16 -11.88 -0.03 -3.27 15 9 H 0.07 3.28 7.16 -2.39 -0.02 3.26 15 10 C -0.52 -30.36 8.90 25.60 0.23 -30.13 15 11 H 0.05 2.95 8.00 -2.91 -0.02 2.93 15 12 C 0.03 2.09 5.16 84.65 0.44 2.53 15 13 N -0.94 -61.12 13.96 21.45 0.30 -60.82 15 14 Si 0.94 49.01 24.16 68.60 1.66 50.67 15 15 H -0.27 -14.65 6.25 99.48 0.62 -14.03 15 16 H -0.30 -15.21 7.11 99.48 0.71 -14.50 15 17 H -0.25 -11.66 6.52 99.48 0.65 -11.01 15 18 C 0.10 3.60 6.10 72.10 0.44 4.04 15 19 O -0.38 -12.18 9.86 -148.98 -1.47 -13.65 15 20 H 0.05 1.05 7.82 -2.39 -0.02 1.03 15 21 H 0.05 0.93 8.14 -2.38 -0.02 0.91 15 22 H 0.07 1.00 8.14 -2.39 -0.02 0.98 15 23 H 0.10 1.45 8.14 -2.39 -0.02 1.43 15 24 H 0.08 1.44 8.14 -2.39 -0.02 1.42 15 25 H 0.12 3.16 8.14 -2.39 -0.02 3.14 15 26 H 0.11 2.84 8.14 -2.39 -0.02 2.82 15 27 H 0.27 16.31 8.31 -92.71 -0.77 15.53 15 28 H 0.04 1.70 8.12 -2.39 -0.02 1.68 15 29 H 0.11 3.83 8.14 -2.39 -0.02 3.81 15 Total: -1.00 -70.79 236.50 3.81 -66.98 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: 0.97 Total: 1.01 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 2.37 Total: -19.47 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.30 Total: -60.82 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -1.49 Total: -38.37 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 1.66 Total: 50.67 kcal Total: -70.79 3.81 -66.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259537437.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.073 kcal (2) G-P(sol) polarization free energy of solvation -70.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds