Wall clock time and date at job start Mon Mar 30 2020 20:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47093 * 60.00328 * 8 6 4 10 10 H 1.48495 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47239 * 300.00048 * 8 6 4 12 12 O 1.45202 * 109.47234 * 240.00058 * 2 1 3 13 13 C 1.34234 * 116.99952 * 89.99608 * 12 2 1 14 14 O 1.20820 * 119.99755 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99963 * 180.02562 * 13 12 2 16 16 H 1.09002 * 115.55018 * 325.66904 * 15 13 12 17 17 C 1.52994 * 117.50198 * 111.37641 * 15 13 12 18 18 C 1.52998 * 117.49939 * 180.02562 * 15 13 12 19 19 H 1.08994 * 117.49845 * 0.02562 * 18 15 13 20 20 C 1.52997 * 117.50094 * 145.01536 * 18 15 13 21 21 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 22 22 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 24 24 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 25 25 H 1.08995 * 117.49985 * 214.97415 * 17 15 13 26 26 H 1.09004 * 117.49718 * 0.02562 * 17 15 13 27 27 H 1.09006 * 109.47043 * 59.99888 * 20 18 15 28 28 H 1.08997 * 109.47183 * 179.97438 * 20 18 15 29 29 H 1.08994 * 109.47515 * 300.00215 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0081 10 1 1.8261 -0.4207 5.2204 11 1 1.8259 -2.5203 4.0077 12 8 2.0140 -0.6845 -1.1856 13 6 2.2170 0.0641 -2.2812 14 8 1.9980 1.2518 -2.2504 15 6 2.7182 -0.5771 -3.5496 16 1 3.4115 -1.4073 -3.4145 17 6 1.7530 -0.6480 -4.7345 18 6 2.9302 0.3296 -4.7635 19 1 2.7076 1.3899 -4.6447 20 6 4.0984 0.0010 -5.6953 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7082 1.1608 3.4845 25 1 1.8111 -1.5249 -5.3792 26 1 0.7555 -0.2304 -4.5968 27 1 3.9667 -1.0010 -6.1037 28 1 4.1276 0.7242 -6.5103 29 1 5.0328 0.0454 -5.1360 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393236350.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:49 Heat of formation + Delta-G solvation = -77.472269 kcal Electronic energy + Delta-G solvation = -12524.067983 eV Core-core repulsion = 10219.807381 eV Total energy + Delta-G solvation = -2304.260602 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.73139 -37.23689 -35.33354 -33.22549 -29.70187 -28.69165 -25.32170 -24.46008 -21.44596 -20.47981 -19.25955 -17.20670 -16.55532 -15.62649 -14.95243 -14.60795 -14.02551 -13.65942 -13.12012 -12.69878 -12.23848 -11.96770 -11.72044 -11.43426 -11.18726 -11.04331 -10.84037 -10.38125 -10.27476 -10.25813 -10.01446 -9.57446 -9.49291 -8.89382 -8.47520 -6.16866 -4.23820 2.84552 3.27460 3.30496 3.32953 3.59615 3.97040 4.34357 4.82581 4.87333 5.07761 5.16419 5.31105 5.61142 5.70933 5.72219 5.84529 6.01021 6.11865 6.34327 6.66116 6.90278 6.93329 7.20032 7.61546 7.74707 7.96056 8.16195 8.67686 8.91978 9.41535 10.90621 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.067723 B = 0.007723 C = 0.007392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.351618 B = 3624.695927 C = 3787.054119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.353 6.353 13 C 0.481 3.519 14 O -0.523 6.523 15 C -0.162 4.162 16 H 0.129 0.871 17 C -0.149 4.149 18 C -0.128 4.128 19 H 0.117 0.883 20 C -0.121 4.121 21 H 0.015 0.985 22 H 0.037 0.963 23 H 0.099 0.901 24 H 0.267 0.733 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 -3.142 -11.620 12.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.740 3.260 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.269 6.269 13 C 0.324 3.676 14 O -0.414 6.414 15 C -0.181 4.181 16 H 0.147 0.853 17 C -0.186 4.186 18 C -0.146 4.146 19 H 0.135 0.865 20 C -0.179 4.179 21 H 0.034 0.966 22 H 0.056 0.944 23 H 0.118 0.882 24 H 0.077 0.923 25 H 0.123 0.877 26 H 0.117 0.883 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.662 -2.679 -11.397 12.006 hybrid contribution 0.179 -0.322 0.997 1.063 sum 2.841 -3.000 -10.400 11.190 Atomic orbital electron populations 1.22154 0.97562 1.00108 1.01356 1.20642 0.91421 0.93925 0.77837 0.93606 1.21000 1.32395 1.13625 0.88924 0.91350 1.24897 0.94952 0.95086 0.99066 1.69893 1.36058 1.22559 1.24261 0.86314 0.79209 0.79528 0.80960 1.19975 1.21030 1.19932 1.86473 1.75602 1.43545 1.21236 1.22311 0.74505 0.85398 0.85402 1.90578 1.49182 1.16917 1.84739 1.21858 1.05377 1.03979 0.86928 0.85269 1.23121 0.95500 1.01673 0.98291 1.22450 0.97738 0.98043 0.96407 0.86482 1.21386 0.96727 1.01468 0.98272 0.96594 0.94409 0.88226 0.92349 0.87676 0.88252 0.92352 0.91798 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.33 37.15 0.35 -3.68 15 2 C 0.21 5.96 2.56 -27.89 -0.07 5.88 15 3 H 0.05 1.40 7.16 -51.93 -0.37 1.03 15 4 C -0.52 -15.01 8.90 -34.44 -0.31 -15.32 15 5 H 0.07 1.93 7.81 -52.48 -0.41 1.52 15 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 15 7 N -0.89 -25.70 11.32 55.43 0.63 -25.07 15 8 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 15 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 12 O -0.35 -8.81 9.86 -39.27 -0.39 -9.19 15 13 C 0.48 10.58 7.71 36.01 0.28 10.86 15 14 O -0.52 -12.88 15.48 -18.75 -0.29 -13.17 15 15 C -0.16 -2.59 6.02 -91.78 -0.55 -3.14 15 16 H 0.13 1.83 8.14 -51.93 -0.42 1.40 15 17 C -0.15 -1.91 9.88 -26.71 -0.26 -2.18 15 18 C -0.13 -1.70 5.92 -90.60 -0.54 -2.24 15 19 H 0.12 1.73 7.67 -51.93 -0.40 1.33 15 20 C -0.12 -1.20 10.19 37.16 0.38 -0.82 15 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 15 22 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.10 2.75 6.07 -51.93 -0.32 2.44 15 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 15 25 H 0.10 1.05 8.05 -51.93 -0.42 0.63 15 26 H 0.10 1.34 8.14 -51.93 -0.42 0.92 15 27 H 0.06 0.50 7.90 -51.93 -0.41 0.09 15 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 15 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 15 LS Contribution 255.14 15.07 3.84 3.84 Total: -1.00 -31.09 255.14 -6.04 -37.13 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -3.99 Total: -0.89 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -0.82 Total: -8.98 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.63 Total: -25.07 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.68 Total: -22.36 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.09 -6.04 -37.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393236350.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.340 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds