Wall clock time and date at job start Mon Mar 30 2020 20:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46631 * 2 1 4 4 H 1.09003 * 109.47222 * 305.36606 * 3 2 1 5 5 C 1.50704 * 109.46773 * 185.36829 * 3 2 1 6 6 H 1.07996 * 119.99741 * 240.00249 * 5 3 2 7 7 C 1.37873 * 120.00053 * 59.72267 * 5 3 2 8 8 N 1.31515 * 120.00059 * 0.27864 * 7 5 3 9 9 Si 1.86803 * 120.00068 * 180.27257 * 7 5 3 10 10 H 1.48505 * 109.46804 * 90.00399 * 9 7 5 11 11 H 1.48497 * 109.47045 * 210.00322 * 9 7 5 12 12 H 1.48491 * 109.47190 * 330.00714 * 9 7 5 13 13 C 1.53000 * 109.47274 * 65.37008 * 3 2 1 14 14 C 1.50699 * 115.54897 * 58.58720 * 13 3 2 15 15 O 1.20821 * 120.00230 * 6.07641 * 14 13 3 16 16 O 1.34235 * 119.99738 * 186.07947 * 14 13 3 17 17 C 1.53000 * 117.49736 * 272.91988 * 13 3 2 18 18 C 1.53000 * 117.50038 * 204.25869 * 13 3 2 19 19 H 1.09001 * 109.47034 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.46948 * 299.99497 * 1 2 3 21 21 H 1.08998 * 109.47249 * 60.00271 * 1 2 3 22 22 H 1.09002 * 109.46948 * 240.00503 * 2 1 3 23 23 H 1.08993 * 109.47016 * 120.00136 * 2 1 3 24 24 H 0.96998 * 120.00072 * 179.97438 * 8 7 5 25 25 H 0.96704 * 116.99390 * 180.02562 * 16 14 13 26 26 H 1.09002 * 117.50135 * 359.97438 * 17 13 3 27 27 H 1.08997 * 117.49782 * 145.02368 * 17 13 3 28 28 H 1.08992 * 117.50041 * 214.98212 * 18 13 3 29 29 H 1.09000 * 117.49621 * 359.97438 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6002 1.9834 -0.8380 5 6 3.5411 1.4447 -0.1329 6 1 4.1510 1.8876 0.6405 7 6 4.1360 0.8761 -1.2391 8 7 3.3933 0.3367 -2.1809 9 14 5.9971 0.8719 -1.4003 10 1 6.5448 -0.3614 -0.7803 11 1 6.3696 0.9111 -2.8372 12 1 6.5563 2.0626 -0.7113 13 6 1.6431 2.1238 1.3112 14 6 2.1536 1.4646 2.5666 15 8 2.9173 0.5314 2.4912 16 8 1.7596 1.9141 3.7685 17 6 0.2675 2.7907 1.3727 18 6 1.5328 3.6498 1.3094 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 3.8118 -0.0630 -2.9594 25 1 2.1141 1.4595 4.5449 26 1 -0.3547 2.7445 0.4789 27 1 -0.2681 2.7530 2.3213 28 1 1.8291 4.1769 2.2162 29 1 1.7434 4.1685 0.3741 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691808660.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:38 Heat of formation + Delta-G solvation = -97.912288 kcal Electronic energy + Delta-G solvation = -13277.629893 eV Core-core repulsion = 10972.482946 eV Total energy + Delta-G solvation = -2305.146948 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.37583 -38.49365 -36.95654 -35.28024 -33.17540 -29.39054 -26.02917 -24.88231 -23.23200 -22.42338 -20.37841 -18.66280 -18.49578 -16.94397 -16.64424 -16.32294 -15.54365 -14.94007 -14.72457 -13.96585 -13.77315 -13.23218 -13.07889 -12.81829 -12.55104 -12.36375 -12.32511 -12.24651 -12.00431 -11.59442 -11.39923 -10.94363 -10.65442 -10.43404 -10.29711 -8.03393 -6.11540 1.36544 1.37789 1.40457 1.48480 2.30136 2.45349 3.11641 3.23887 3.86140 4.04414 4.21349 4.64646 4.69794 4.78386 4.81756 4.88883 5.07710 5.18905 5.31562 5.35122 5.41051 5.57838 5.71303 5.76333 6.03160 6.15350 6.47126 6.92139 7.27111 7.52414 9.00629 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.035159 B = 0.014167 C = 0.012544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.194312 B = 1976.001116 C = 2231.606389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.099 3.901 4 H 0.020 0.980 5 C -0.499 4.499 6 H 0.037 0.963 7 C 0.010 3.990 8 N -0.917 5.917 9 Si 0.943 3.057 10 H -0.287 1.287 11 H -0.279 1.279 12 H -0.271 1.271 13 C -0.142 4.142 14 C 0.511 3.489 15 O -0.531 6.531 16 O -0.513 6.513 17 C -0.133 4.133 18 C -0.140 4.140 19 H 0.043 0.957 20 H 0.059 0.941 21 H 0.047 0.953 22 H 0.058 0.942 23 H 0.027 0.973 24 H 0.258 0.742 25 H 0.421 0.579 26 H 0.108 0.892 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 4.803 8.057 11.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.081 3.919 4 H 0.038 0.962 5 C -0.538 4.538 6 H 0.055 0.945 7 C -0.187 4.187 8 N -0.558 5.558 9 Si 0.770 3.230 10 H -0.213 1.213 11 H -0.204 1.204 12 H -0.196 1.196 13 C -0.143 4.143 14 C 0.355 3.645 15 O -0.420 6.420 16 O -0.327 6.327 17 C -0.170 4.170 18 C -0.177 4.177 19 H 0.062 0.938 20 H 0.078 0.922 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.067 0.933 25 H 0.281 0.719 26 H 0.126 0.874 27 H 0.138 0.862 28 H 0.130 0.870 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.103 4.667 7.527 10.755 hybrid contribution 1.606 -0.750 0.170 1.780 sum -4.497 3.917 7.697 9.737 Atomic orbital electron populations 1.21798 0.96182 1.00409 1.01101 1.21528 0.94332 0.99516 1.00583 1.18032 0.94064 0.92022 0.87783 0.96207 1.21287 0.92914 1.35875 1.03676 0.94454 1.25563 1.01509 0.95658 0.95990 1.69982 1.35753 1.40093 1.10007 0.85792 0.82036 0.78119 0.77100 1.21311 1.20426 1.19557 1.21382 1.03965 0.97010 0.91949 1.22513 0.77126 0.80511 0.84386 1.90679 1.34489 1.29310 1.87532 1.84446 1.69673 1.61900 1.16639 1.23206 0.88875 1.00219 1.04692 1.23065 1.01077 0.89416 1.04155 0.93769 0.92186 0.93435 0.92326 0.95450 0.93272 0.71864 0.87366 0.86242 0.87038 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 9.31 71.98 0.67 -4.69 15 2 C -0.12 -6.06 5.08 30.60 0.16 -5.90 15 3 C 0.10 4.95 1.54 -11.54 -0.02 4.93 15 4 H 0.02 1.05 8.11 -2.39 -0.02 1.03 15 5 C -0.50 -28.43 7.40 25.60 0.19 -28.24 15 6 H 0.04 2.18 7.47 -2.91 -0.02 2.16 15 7 C 0.01 0.58 5.29 84.65 0.45 1.03 15 8 N -0.92 -54.26 11.28 21.45 0.24 -54.02 15 9 Si 0.94 46.20 29.54 68.60 2.03 48.22 15 10 H -0.29 -14.16 7.11 99.48 0.71 -13.46 15 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 15 12 H -0.27 -12.90 7.11 99.48 0.71 -12.19 15 13 C -0.14 -5.64 1.14 -52.93 -0.06 -5.70 15 14 C 0.51 20.34 7.44 71.24 0.53 20.87 15 15 O -0.53 -25.82 14.37 21.98 0.32 -25.50 15 16 O -0.51 -14.59 12.86 -51.46 -0.66 -15.25 15 17 C -0.13 -3.94 7.88 30.62 0.24 -3.70 15 18 C -0.14 -4.51 9.85 30.62 0.30 -4.20 15 19 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 20 H 0.06 2.05 6.02 -2.39 -0.01 2.04 15 21 H 0.05 1.79 8.14 -2.39 -0.02 1.77 15 22 H 0.06 3.33 5.93 -2.39 -0.01 3.32 15 23 H 0.03 1.43 6.04 -2.39 -0.01 1.42 15 24 H 0.26 14.60 8.31 -92.71 -0.77 13.83 15 25 H 0.42 8.07 9.10 -74.05 -0.67 7.39 15 26 H 0.11 3.06 7.90 -2.39 -0.02 3.04 15 27 H 0.12 2.95 7.94 -2.39 -0.02 2.93 15 28 H 0.11 3.11 8.14 -2.39 -0.02 3.09 15 29 H 0.10 3.29 8.14 -2.39 -0.02 3.27 15 Total: -1.00 -68.25 243.68 4.86 -63.39 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.48 Total: 8.77 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 2.46 Total: -25.61 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.24 Total: -54.02 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -0.35 Total: -40.75 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -68.25 4.86 -63.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691808660.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.522 kcal (2) G-P(sol) polarization free energy of solvation -68.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds