Wall clock time and date at job start Mon Mar 30 2020 20:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 110.34482 * 2 1 4 4 H 1.07996 * 120.00075 * 119.32603 * 3 2 1 5 5 C 1.37884 * 119.99759 * 299.32689 * 3 2 1 6 6 N 1.31513 * 119.99970 * 0.02562 * 5 3 2 7 7 Si 1.86798 * 119.99814 * 180.02562 * 5 3 2 8 8 H 1.48499 * 109.47400 * 89.99763 * 7 5 3 9 9 H 1.48491 * 109.47278 * 210.00301 * 7 5 3 10 10 H 1.48505 * 109.47189 * 329.99919 * 7 5 3 11 11 C 1.55007 * 110.30018 * 122.11861 * 2 1 3 12 12 C 1.55476 * 101.03190 * 82.86711 * 11 2 1 13 13 C 1.53727 * 101.99719 * 33.54201 * 12 11 2 14 14 C 1.53299 * 114.79312 * 208.07578 * 13 12 11 15 15 O 1.44323 * 85.29763 * 222.04470 * 14 13 12 16 16 C 1.44322 * 93.45208 * 23.67811 * 15 14 13 17 17 O 1.42467 * 108.44184 * 339.08743 * 13 12 11 18 18 H 1.09002 * 109.47244 * 180.66685 * 1 2 3 19 19 H 1.09000 * 109.47201 * 300.67362 * 1 2 3 20 20 H 1.09002 * 109.46738 * 60.67277 * 1 2 3 21 21 H 0.96996 * 119.99850 * 180.02562 * 6 5 3 22 22 H 1.08997 * 111.11172 * 324.92809 * 11 2 1 23 23 H 1.09006 * 111.10808 * 200.80107 * 11 2 1 24 24 H 1.09005 * 110.92160 * 275.37258 * 12 11 2 25 25 H 1.08996 * 110.92401 * 151.72055 * 12 11 2 26 26 H 1.09006 * 113.90482 * 336.13477 * 14 13 12 27 27 H 1.09002 * 113.90151 * 107.95384 * 14 13 12 28 28 H 1.08994 * 113.89836 * 222.23878 * 16 15 14 29 29 H 1.09001 * 113.90101 * 90.41396 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0540 1.4130 0.0000 4 1 2.6712 1.7601 0.8154 5 6 1.7452 2.2628 -1.0411 6 7 0.9932 1.8402 -2.0338 7 14 2.3953 4.0140 -1.0415 8 1 3.7117 4.0533 -1.7275 9 1 1.4384 4.8970 -1.7554 10 1 2.5525 4.4840 0.3585 11 6 2.0678 -0.7729 1.2313 12 6 1.9933 -2.2387 0.7182 13 6 2.2965 -2.0689 -0.7793 14 6 1.6723 -3.1354 -1.6865 15 8 2.9419 -3.1246 -2.3728 16 6 3.6565 -2.6184 -1.2256 17 8 2.0292 -0.7176 -1.1428 18 1 -0.3634 -1.0276 0.0120 19 1 -0.3633 0.5243 0.8839 20 1 -0.3633 0.5034 -0.8960 21 1 0.7763 2.4379 -2.7663 22 1 1.4235 -0.6274 2.0983 23 1 3.0956 -0.4875 1.4558 24 1 0.9966 -2.6537 0.8690 25 1 2.7488 -2.8588 1.2006 26 1 1.4531 -4.0744 -1.1782 27 1 0.8411 -2.7705 -2.2898 28 1 4.3873 -1.8463 -1.4660 29 1 4.0537 -3.3967 -0.5740 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703534767.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:57 Heat of formation + Delta-G solvation = -54.488934 kcal Electronic energy + Delta-G solvation = -13458.315072 eV Core-core repulsion = 11155.051102 eV Total energy + Delta-G solvation = -2303.263970 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.19719 -37.14789 -32.77909 -31.22004 -29.75913 -26.57640 -26.02449 -25.25902 -22.40300 -19.88079 -18.77539 -16.54988 -15.82285 -15.59418 -15.04628 -14.48943 -14.01267 -13.39705 -12.97378 -12.36860 -12.09548 -11.99913 -11.42169 -11.14710 -10.90896 -10.71935 -10.58613 -10.35630 -10.12284 -9.68300 -9.48671 -9.28570 -8.93641 -8.52503 -8.04479 -5.99756 -4.15956 3.30031 3.36993 3.38789 4.13376 4.40077 4.85549 4.94547 5.37419 5.43654 5.55793 5.63920 5.89467 6.06708 6.23325 6.23661 6.27809 6.47451 6.60180 6.66688 6.69052 6.74584 6.84373 7.07472 7.27013 7.74736 8.05446 8.29501 8.57240 8.98933 9.54994 11.03389 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.046409 B = 0.012633 C = 0.011793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.190306 B = 2215.884805 C = 2373.651672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.227 3.773 3 C -0.528 4.528 4 H 0.063 0.937 5 C 0.080 3.920 6 N -0.858 5.858 7 Si 0.891 3.109 8 H -0.279 1.279 9 H -0.285 1.285 10 H -0.273 1.273 11 C -0.141 4.141 12 C -0.151 4.151 13 C 0.049 3.951 14 C 0.023 3.977 15 O -0.380 6.380 16 C 0.027 3.973 17 O -0.316 6.316 18 H 0.012 0.988 19 H 0.037 0.963 20 H 0.087 0.913 21 H 0.261 0.739 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.918 -6.657 4.297 7.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.191 3.809 3 C -0.565 4.565 4 H 0.081 0.919 5 C -0.126 4.126 6 N -0.494 5.494 7 Si 0.719 3.281 8 H -0.205 1.205 9 H -0.211 1.211 10 H -0.198 1.198 11 C -0.179 4.179 12 C -0.189 4.189 13 C 0.006 3.994 14 C -0.054 4.054 15 O -0.299 6.299 16 C -0.051 4.051 17 O -0.235 6.235 18 H 0.031 0.969 19 H 0.057 0.943 20 H 0.106 0.894 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.924 -6.568 3.654 7.572 hybrid contribution 0.260 0.806 0.294 0.896 sum 1.183 -5.762 3.947 7.084 Atomic orbital electron populations 1.22077 0.97876 0.97529 1.02815 1.20094 0.90640 0.90561 0.79625 1.20979 1.33982 0.93957 1.07571 0.91856 1.25045 0.94058 0.98361 0.95126 1.69967 1.34882 1.35453 1.09086 0.86624 0.78942 0.84384 0.78195 1.20490 1.21105 1.19796 1.23333 1.01345 0.93190 1.00014 1.23062 1.01280 0.98802 0.95722 1.24217 0.93195 0.88900 0.93088 1.24423 0.89208 0.97444 0.94345 1.89621 1.20457 1.87954 1.31856 1.24397 0.97091 0.96617 0.86951 1.88831 1.83417 1.14726 1.36507 0.96914 0.94343 0.89437 0.92895 0.91811 0.91621 0.91191 0.91549 0.90705 0.88944 0.88892 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.63 37.16 0.32 -3.16 15 2 C 0.23 5.66 0.72 -90.71 -0.07 5.60 15 3 C -0.53 -14.47 8.28 -34.44 -0.29 -14.76 15 4 H 0.06 1.70 7.76 -52.49 -0.41 1.29 15 5 C 0.08 2.22 5.28 -17.82 -0.09 2.13 15 6 N -0.86 -24.80 11.08 55.43 0.61 -24.18 15 7 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 15 8 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 9 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 10 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 11 C -0.14 -2.88 6.02 -24.36 -0.15 -3.02 15 12 C -0.15 -2.66 5.98 -25.04 -0.15 -2.81 15 13 C 0.05 0.99 1.69 -89.92 -0.15 0.84 15 14 C 0.02 0.43 8.71 37.27 0.32 0.75 15 15 O -0.38 -7.88 12.46 -42.22 -0.53 -8.40 15 16 C 0.03 0.49 8.69 37.28 0.32 0.82 15 17 O -0.32 -8.23 10.03 -42.22 -0.42 -8.65 15 18 H 0.01 0.26 7.51 -51.93 -0.39 -0.13 15 19 H 0.04 0.86 8.14 -51.93 -0.42 0.44 15 20 H 0.09 2.34 6.22 -51.93 -0.32 2.02 15 21 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 22 H 0.06 1.20 8.03 -51.93 -0.42 0.78 15 23 H 0.07 1.33 8.04 -51.93 -0.42 0.92 15 24 H 0.07 1.14 7.79 -51.93 -0.40 0.74 15 25 H 0.07 0.99 7.78 -51.93 -0.40 0.58 15 26 H 0.07 1.12 8.12 -51.93 -0.42 0.70 15 27 H 0.09 1.78 8.14 -51.93 -0.42 1.36 15 28 H 0.09 1.79 8.14 -51.93 -0.42 1.36 15 29 H 0.08 1.13 7.90 -51.93 -0.41 0.72 15 LS Contribution 240.31 15.07 3.62 3.62 Total: -1.00 -30.27 240.31 -5.66 -35.93 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.00 Total: -0.84 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 0.08 Total: -13.61 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.61 Total: -24.18 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.95 Total: -17.05 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.27 -5.66 -35.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703534767.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.561 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds