Wall clock time and date at job start Mon Mar 30 2020 20:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 110.34482 * 2 1 4 4 H 1.07996 * 120.00075 * 119.32603 * 3 2 1 5 5 C 1.37884 * 119.99759 * 299.32689 * 3 2 1 6 6 N 1.31513 * 119.99970 * 0.02562 * 5 3 2 7 7 Si 1.86798 * 119.99814 * 180.02562 * 5 3 2 8 8 H 1.48499 * 109.47400 * 89.99763 * 7 5 3 9 9 H 1.48491 * 109.47278 * 210.00301 * 7 5 3 10 10 H 1.48505 * 109.47189 * 329.99919 * 7 5 3 11 11 C 1.55007 * 110.30018 * 122.11861 * 2 1 3 12 12 C 1.55476 * 101.03190 * 82.86711 * 11 2 1 13 13 C 1.53727 * 101.99719 * 33.54201 * 12 11 2 14 14 C 1.53299 * 114.79312 * 208.07578 * 13 12 11 15 15 O 1.44323 * 85.29763 * 222.04470 * 14 13 12 16 16 C 1.44322 * 93.45208 * 23.67811 * 15 14 13 17 17 O 1.42467 * 108.44184 * 339.08743 * 13 12 11 18 18 H 1.09002 * 109.47244 * 180.66685 * 1 2 3 19 19 H 1.09000 * 109.47201 * 300.67362 * 1 2 3 20 20 H 1.09002 * 109.46738 * 60.67277 * 1 2 3 21 21 H 0.96996 * 119.99850 * 180.02562 * 6 5 3 22 22 H 1.08997 * 111.11172 * 324.92809 * 11 2 1 23 23 H 1.09006 * 111.10808 * 200.80107 * 11 2 1 24 24 H 1.09005 * 110.92160 * 275.37258 * 12 11 2 25 25 H 1.08996 * 110.92401 * 151.72055 * 12 11 2 26 26 H 1.09006 * 113.90482 * 336.13477 * 14 13 12 27 27 H 1.09002 * 113.90151 * 107.95384 * 14 13 12 28 28 H 1.08994 * 113.89836 * 222.23878 * 16 15 14 29 29 H 1.09001 * 113.90101 * 90.41396 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0540 1.4130 0.0000 4 1 2.6712 1.7601 0.8154 5 6 1.7452 2.2628 -1.0411 6 7 0.9932 1.8402 -2.0338 7 14 2.3953 4.0140 -1.0415 8 1 3.7117 4.0533 -1.7275 9 1 1.4384 4.8970 -1.7554 10 1 2.5525 4.4840 0.3585 11 6 2.0678 -0.7729 1.2313 12 6 1.9933 -2.2387 0.7182 13 6 2.2965 -2.0689 -0.7793 14 6 1.6723 -3.1354 -1.6865 15 8 2.9419 -3.1246 -2.3728 16 6 3.6565 -2.6184 -1.2256 17 8 2.0292 -0.7176 -1.1428 18 1 -0.3634 -1.0276 0.0120 19 1 -0.3633 0.5243 0.8839 20 1 -0.3633 0.5034 -0.8960 21 1 0.7763 2.4379 -2.7663 22 1 1.4235 -0.6274 2.0983 23 1 3.0956 -0.4875 1.4558 24 1 0.9966 -2.6537 0.8690 25 1 2.7488 -2.8588 1.2006 26 1 1.4531 -4.0744 -1.1782 27 1 0.8411 -2.7705 -2.2898 28 1 4.3873 -1.8463 -1.4660 29 1 4.0537 -3.3967 -0.5740 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703534767.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:57 Heat of formation + Delta-G solvation = -75.325409 kcal Electronic energy + Delta-G solvation = -13459.218609 eV Core-core repulsion = 11155.051102 eV Total energy + Delta-G solvation = -2304.167507 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.73661 -38.83446 -34.77781 -32.90689 -31.51892 -28.21855 -27.53014 -27.22528 -23.99998 -21.59991 -20.38629 -18.50102 -17.40141 -17.10586 -16.75107 -16.26353 -15.62713 -15.22528 -14.59233 -13.97625 -13.84392 -13.63251 -13.04559 -12.94943 -12.74725 -12.53293 -12.30721 -12.13179 -12.03267 -11.22569 -11.07720 -10.94781 -10.60457 -10.54832 -9.85081 -8.06604 -6.29350 1.40616 1.41989 1.51513 2.41941 2.63682 3.10713 3.49199 3.54605 3.95718 4.09125 4.33401 4.45137 4.59151 4.70880 4.73408 4.79813 4.95179 4.96264 5.09932 5.16224 5.21843 5.25394 5.29788 5.47114 5.66944 6.11211 6.31623 6.63119 7.11460 7.46223 8.95256 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.046409 B = 0.012633 C = 0.011793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.190306 B = 2215.884805 C = 2373.651672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.210 3.790 3 C -0.547 4.547 4 H 0.061 0.939 5 C 0.029 3.971 6 N -0.891 5.891 7 Si 0.952 3.048 8 H -0.281 1.281 9 H -0.282 1.282 10 H -0.262 1.262 11 C -0.137 4.137 12 C -0.135 4.135 13 C 0.023 3.977 14 C 0.030 3.970 15 O -0.410 6.410 16 C 0.032 3.968 17 O -0.361 6.361 18 H 0.034 0.966 19 H 0.043 0.957 20 H 0.051 0.949 21 H 0.258 0.742 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.121 0.879 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.389 -7.963 5.815 9.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.173 3.827 3 C -0.584 4.584 4 H 0.079 0.921 5 C -0.174 4.174 6 N -0.528 5.528 7 Si 0.777 3.223 8 H -0.207 1.207 9 H -0.208 1.208 10 H -0.186 1.186 11 C -0.175 4.175 12 C -0.172 4.172 13 C -0.019 4.019 14 C -0.047 4.047 15 O -0.330 6.330 16 C -0.044 4.044 17 O -0.281 6.281 18 H 0.053 0.947 19 H 0.062 0.938 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.097 0.903 23 H 0.079 0.921 24 H 0.105 0.895 25 H 0.122 0.878 26 H 0.139 0.861 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.398 -7.879 5.189 9.537 hybrid contribution 0.126 1.162 -0.182 1.183 sum 1.524 -6.717 5.006 8.515 Atomic orbital electron populations 1.21934 0.97881 0.98394 1.01236 1.20209 0.90814 0.90172 0.81507 1.21430 1.33581 0.96071 1.07351 0.92120 1.25817 0.94415 1.02172 0.94958 1.70125 1.36370 1.36584 1.09708 0.85668 0.78018 0.80009 0.78565 1.20696 1.20792 1.18621 1.23225 1.01057 0.94621 0.98601 1.23033 1.03539 0.97355 0.93264 1.24606 0.94843 0.86952 0.95465 1.24557 0.87907 0.98719 0.93468 1.89591 1.21668 1.88180 1.33524 1.24559 0.95865 0.97331 0.86659 1.88728 1.83915 1.17862 1.37582 0.94750 0.93792 0.92973 0.93281 0.90274 0.92088 0.89495 0.87821 0.86111 0.90804 0.90740 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.53 8.63 71.98 0.62 -5.91 15 2 C 0.21 10.37 0.72 -10.85 -0.01 10.36 15 3 C -0.55 -30.25 8.28 25.60 0.21 -30.04 15 4 H 0.06 3.26 7.76 -2.91 -0.02 3.24 15 5 C 0.03 1.62 5.28 84.66 0.45 2.07 15 6 N -0.89 -52.99 11.08 21.45 0.24 -52.75 15 7 Si 0.95 44.06 29.54 68.60 2.03 46.09 15 8 H -0.28 -12.97 7.11 99.48 0.71 -12.27 15 9 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 10 H -0.26 -11.52 7.11 99.48 0.71 -10.81 15 11 C -0.14 -5.28 6.02 32.13 0.19 -5.09 15 12 C -0.13 -4.19 5.98 31.69 0.19 -4.00 15 13 C 0.02 0.89 1.69 -10.34 -0.02 0.88 15 14 C 0.03 1.05 8.71 72.05 0.63 1.67 15 15 O -0.41 -16.36 12.46 -142.29 -1.77 -18.14 15 16 C 0.03 1.12 8.69 72.06 0.63 1.75 15 17 O -0.36 -18.86 10.03 -142.29 -1.43 -20.29 15 18 H 0.03 1.42 7.51 -2.39 -0.02 1.41 15 19 H 0.04 1.96 8.14 -2.39 -0.02 1.94 15 20 H 0.05 2.85 6.22 -2.39 -0.01 2.84 15 21 H 0.26 14.69 8.31 -92.71 -0.77 13.91 15 22 H 0.08 2.75 8.03 -2.39 -0.02 2.73 15 23 H 0.06 2.36 8.04 -2.38 -0.02 2.34 15 24 H 0.09 2.42 7.79 -2.38 -0.02 2.40 15 25 H 0.10 2.48 7.78 -2.39 -0.02 2.46 15 26 H 0.12 3.07 8.12 -2.38 -0.02 3.05 15 27 H 0.07 2.80 8.14 -2.39 -0.02 2.78 15 28 H 0.07 2.82 8.14 -2.39 -0.02 2.80 15 29 H 0.12 3.08 7.90 -2.39 -0.02 3.06 15 Total: -1.00 -66.66 240.31 3.08 -63.59 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.12 Total: 9.80 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 2.89 Total: -28.30 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.24 Total: -52.75 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -3.20 Total: -38.43 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -66.66 3.08 -63.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703534767.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.739 kcal (2) G-P(sol) polarization free energy of solvation -66.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds