Wall clock time and date at job start Mon Mar 30 2020 20:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 119.99753 * 2 1 4 4 H 1.48503 * 109.47309 * 240.00075 * 3 2 1 5 5 H 1.48501 * 109.47530 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47289 * 120.00236 * 3 2 1 7 7 C 1.38945 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00126 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00420 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00120 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00338 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99896 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47090 * 179.97438 * 12 10 9 14 14 C 1.48080 * 110.99635 * 184.99775 * 13 12 10 15 15 C 1.54226 * 105.75047 * 145.34112 * 14 13 12 16 16 C 1.54558 * 104.50012 * 359.00165 * 15 14 13 17 17 N 1.46882 * 111.00086 * 302.24993 * 13 12 10 18 18 H 0.96996 * 120.00026 * 359.97438 * 1 2 3 19 19 H 0.97005 * 119.99575 * 359.97438 * 9 7 2 20 20 H 1.09006 * 109.47057 * 59.99628 * 12 10 9 21 21 H 1.08996 * 109.47244 * 299.99620 * 12 10 9 22 22 H 1.09000 * 110.19478 * 26.27179 * 14 13 12 23 23 H 1.08994 * 110.26235 * 264.44586 * 14 13 12 24 24 H 1.09004 * 110.42528 * 117.75788 * 15 14 13 25 25 H 1.09004 * 110.42732 * 240.24096 * 15 14 13 26 26 H 1.08997 * 110.62580 * 95.81830 * 16 15 14 27 27 H 1.09004 * 110.62008 * 218.81760 * 16 15 14 28 28 H 1.00907 * 110.99558 * 79.88223 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1986 -5.9795 -0.0027 14 6 1.4967 -7.2777 -0.1237 15 6 2.4261 -8.1797 -0.9610 16 6 3.6389 -7.2817 -1.2949 17 7 3.0969 -5.9035 -1.1624 18 1 -0.4850 0.8400 0.0004 19 1 0.3534 -2.3906 -0.0016 20 1 0.6176 -4.9204 -0.8924 21 1 0.6170 -4.9209 0.8875 22 1 0.5429 -7.1436 -0.6340 23 1 1.3372 -7.7140 0.8623 24 1 2.7423 -9.0451 -0.3784 25 1 1.9250 -8.4980 -1.8752 26 1 4.4467 -7.4467 -0.5820 27 1 3.9818 -7.4630 -2.3136 28 1 3.8377 -5.2373 -1.0028 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307114708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:30:40 Heat of formation + Delta-G solvation = 1.142735 kcal Electronic energy + Delta-G solvation = -12721.043364 eV Core-core repulsion = 10387.058604 eV Total energy + Delta-G solvation = -2333.984759 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.106 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.73234 -37.31757 -33.91141 -31.95021 -31.10063 -29.91485 -26.76099 -24.32034 -21.77165 -20.91488 -19.20228 -17.82628 -16.40142 -15.69313 -15.46757 -14.68662 -14.39098 -13.81758 -13.39826 -12.61919 -12.58515 -12.25488 -11.81400 -11.62301 -11.49693 -11.34108 -11.07524 -10.83355 -10.42125 -10.18672 -9.66526 -9.45933 -8.34543 -7.94604 -7.39920 -6.38691 -3.79538 3.22333 3.27668 3.32126 3.86053 3.96231 4.20750 4.68706 4.95237 5.07985 5.19776 5.29508 5.48800 5.63198 5.81921 5.87645 5.92108 6.05651 6.12142 6.19439 6.31843 6.95711 7.37345 7.57554 7.83912 8.10667 8.64765 9.20707 9.57254 10.08930 10.79118 Molecular weight = 199.11amu Principal moments of inertia in cm(-1) A = 0.085135 B = 0.007535 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.812237 B = 3714.872563 C = 3948.873761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.452 3.548 11 O -0.588 6.588 12 C 0.040 3.960 13 N -0.357 5.357 14 C 0.029 3.971 15 C -0.127 4.127 16 C 0.030 3.970 17 N -0.521 5.521 18 H 0.272 0.728 19 H 0.393 0.607 20 H 0.057 0.943 21 H 0.093 0.907 22 H 0.049 0.951 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 -11.359 -1.176 11.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.238 3.762 11 O -0.473 6.473 12 C -0.093 4.093 13 N -0.172 5.172 14 C -0.100 4.100 15 C -0.165 4.165 16 C -0.101 4.101 17 N -0.249 5.249 18 H 0.082 0.918 19 H 0.226 0.774 20 H 0.075 0.925 21 H 0.111 0.889 22 H 0.067 0.933 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.946 -11.117 -1.211 11.223 hybrid contribution -0.168 0.752 0.008 0.771 sum 0.778 -10.365 -1.203 10.463 Atomic orbital electron populations 1.69606 1.05937 1.28234 1.50608 1.25257 0.95628 0.99701 0.97341 0.85912 0.78743 0.80472 0.79038 1.19924 1.21005 1.19925 1.19651 0.93332 0.82227 1.47632 0.87968 1.41813 1.09197 1.04539 1.64272 1.19640 0.88217 0.84506 0.83869 1.90368 1.13990 1.86937 1.55975 1.22090 0.94341 0.91165 1.01662 1.67782 1.15840 1.01039 1.32559 1.23053 0.96364 0.90667 0.99929 1.22483 0.96259 0.97986 0.99812 1.22982 0.95974 0.90274 1.00825 1.66730 1.21320 1.06028 1.30811 0.91840 0.77416 0.92523 0.88942 0.93281 0.90030 0.91126 0.91200 0.93712 0.89937 0.80552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.88 13.05 55.50 0.72 -24.16 15 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 15 3 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 15 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.30 -8.45 9.68 -14.94 -0.14 -8.60 15 8 H 0.10 3.01 7.16 -52.48 -0.38 2.64 15 9 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 15 10 C 0.45 11.03 7.62 -10.99 -0.08 10.94 15 11 O -0.59 -15.96 13.68 5.55 0.08 -15.89 15 12 C 0.04 0.76 5.66 -4.97 -0.03 0.73 15 13 N -0.36 -6.53 5.49 -113.45 -0.62 -7.15 15 14 C 0.03 0.41 6.92 -2.53 -0.02 0.39 15 15 C -0.13 -1.53 7.04 -25.27 -0.18 -1.70 15 16 C 0.03 0.43 7.74 -2.01 -0.02 0.41 15 17 N -0.52 -9.61 7.16 -8.53 -0.06 -9.67 15 18 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 19 H 0.39 9.76 7.90 -40.82 -0.32 9.44 15 20 H 0.06 1.04 7.97 -51.93 -0.41 0.62 15 21 H 0.09 1.58 8.14 -51.93 -0.42 1.16 15 22 H 0.05 0.65 7.67 -51.93 -0.40 0.25 15 23 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.04 0.62 8.14 -51.93 -0.42 0.19 15 27 H 0.08 1.02 8.14 -51.93 -0.42 0.59 15 28 H 0.37 7.74 6.75 -173.38 -1.17 6.56 15 LS Contribution 240.32 15.07 3.62 3.62 Total: -1.00 -30.83 240.32 -6.26 -37.09 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -4.35 Total: 11.85 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -0.56 Total: 2.68 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.02 Total: -55.63 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.08 Total: -15.89 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.83 -6.26 -37.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307114708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.232 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds