Wall clock time and date at job start Mon Mar 30 2020 20:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 119.99753 * 2 1 4 4 H 1.48503 * 109.47309 * 240.00075 * 3 2 1 5 5 H 1.48501 * 109.47530 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47289 * 120.00236 * 3 2 1 7 7 C 1.38945 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00126 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00420 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00120 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00338 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99896 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47090 * 179.97438 * 12 10 9 14 14 C 1.48080 * 110.99635 * 184.99775 * 13 12 10 15 15 C 1.54226 * 105.75047 * 145.34112 * 14 13 12 16 16 C 1.54558 * 104.50012 * 359.00165 * 15 14 13 17 17 N 1.46882 * 111.00086 * 302.24993 * 13 12 10 18 18 H 0.96996 * 120.00026 * 359.97438 * 1 2 3 19 19 H 0.97005 * 119.99575 * 359.97438 * 9 7 2 20 20 H 1.09006 * 109.47057 * 59.99628 * 12 10 9 21 21 H 1.08996 * 109.47244 * 299.99620 * 12 10 9 22 22 H 1.09000 * 110.19478 * 26.27179 * 14 13 12 23 23 H 1.08994 * 110.26235 * 264.44586 * 14 13 12 24 24 H 1.09004 * 110.42528 * 117.75788 * 15 14 13 25 25 H 1.09004 * 110.42732 * 240.24096 * 15 14 13 26 26 H 1.08997 * 110.62580 * 95.81830 * 16 15 14 27 27 H 1.09004 * 110.62008 * 218.81760 * 16 15 14 28 28 H 1.00907 * 110.99558 * 79.88223 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1986 -5.9795 -0.0027 14 6 1.4967 -7.2777 -0.1237 15 6 2.4261 -8.1797 -0.9610 16 6 3.6389 -7.2817 -1.2949 17 7 3.0969 -5.9035 -1.1624 18 1 -0.4850 0.8400 0.0004 19 1 0.3534 -2.3906 -0.0016 20 1 0.6176 -4.9204 -0.8924 21 1 0.6170 -4.9209 0.8875 22 1 0.5429 -7.1436 -0.6340 23 1 1.3372 -7.7140 0.8623 24 1 2.7423 -9.0451 -0.3784 25 1 1.9250 -8.4980 -1.8752 26 1 4.4467 -7.4467 -0.5820 27 1 3.9818 -7.4630 -2.3136 28 1 3.8377 -5.2373 -1.0028 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307114708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:30:40 Heat of formation + Delta-G solvation = -22.921341 kcal Electronic energy + Delta-G solvation = -12722.086860 eV Core-core repulsion = 10387.058604 eV Total energy + Delta-G solvation = -2335.028256 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.39038 -38.85391 -35.94903 -33.52119 -32.96169 -31.09201 -28.39247 -26.17506 -23.09897 -22.00187 -21.07069 -19.86939 -17.84665 -17.33170 -16.85603 -16.39060 -16.11472 -15.64329 -14.96661 -14.35874 -13.79544 -13.64785 -13.47908 -13.14031 -12.89396 -12.78786 -12.49968 -12.42441 -12.12155 -12.01812 -11.48476 -10.84538 -10.29458 -10.01387 -8.76085 -8.45851 -5.94747 1.40363 1.41900 1.53106 2.05381 2.28836 2.57575 3.14467 3.21751 3.83456 3.94426 4.12460 4.26360 4.34295 4.51735 4.57595 4.64175 4.79953 4.88874 5.10175 5.21525 5.41188 5.61777 5.97803 6.13143 6.37274 6.60690 7.12860 7.55656 8.11066 8.71607 Molecular weight = 199.11amu Principal moments of inertia in cm(-1) A = 0.085135 B = 0.007535 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.812237 B = 3714.872563 C = 3948.873761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.995 3.005 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.572 5.572 10 C 0.448 3.552 11 O -0.619 6.619 12 C 0.051 3.949 13 N -0.378 5.378 14 C 0.024 3.976 15 C -0.119 4.119 16 C 0.025 3.975 17 N -0.541 5.541 18 H 0.278 0.722 19 H 0.396 0.604 20 H 0.067 0.933 21 H 0.116 0.884 22 H 0.057 0.943 23 H 0.100 0.900 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.044 0.956 27 H 0.098 0.902 28 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.006 -12.223 -1.216 12.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.098 0.902 9 N -0.209 5.209 10 C 0.235 3.765 11 O -0.505 6.505 12 C -0.081 4.081 13 N -0.194 5.194 14 C -0.104 4.104 15 C -0.157 4.157 16 C -0.105 4.105 17 N -0.266 5.266 18 H 0.087 0.913 19 H 0.230 0.770 20 H 0.085 0.915 21 H 0.134 0.866 22 H 0.076 0.924 23 H 0.118 0.882 24 H 0.114 0.886 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.116 0.884 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.438 -12.023 -1.256 12.096 hybrid contribution -0.003 0.932 0.014 0.932 sum 0.435 -11.091 -1.242 11.169 Atomic orbital electron populations 1.69671 1.06881 1.29370 1.50336 1.26054 0.96547 1.02444 0.96247 0.84969 0.77729 0.76560 0.78938 1.19725 1.19488 1.19667 1.19643 0.92738 0.83942 1.49970 0.90194 1.41882 1.09284 1.04660 1.65074 1.20604 0.88200 0.85780 0.81884 1.90349 1.15700 1.87712 1.56776 1.21988 0.94057 0.88795 1.03218 1.67769 1.16285 1.02243 1.33058 1.23237 0.96743 0.88857 1.01602 1.22516 0.94783 0.97858 1.00557 1.23158 0.96937 0.88520 1.01859 1.66746 1.21142 1.07856 1.30862 0.91290 0.77037 0.91495 0.86573 0.92441 0.88195 0.88645 0.89746 0.93764 0.88356 0.82794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.50 13.05 21.66 0.28 -50.22 15 2 C -0.01 -0.72 5.50 84.92 0.47 -0.25 15 3 Si 0.99 43.46 29.55 68.60 2.03 45.49 15 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 15 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 7 C -0.33 -19.25 9.68 84.04 0.81 -18.44 15 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 15 9 N -0.57 -30.19 5.29 -306.99 -1.62 -31.81 15 10 C 0.45 22.11 7.62 87.66 0.67 22.78 15 11 O -0.62 -34.48 13.68 -3.06 -0.04 -34.52 15 12 C 0.05 1.93 5.66 85.56 0.48 2.41 15 13 N -0.38 -13.31 5.49 -512.84 -2.82 -16.13 15 14 C 0.02 0.60 6.92 86.49 0.60 1.20 15 15 C -0.12 -2.47 7.04 31.54 0.22 -2.25 15 16 C 0.03 0.67 7.74 86.49 0.67 1.34 15 17 N -0.54 -19.67 7.16 -180.90 -1.30 -20.96 15 18 H 0.28 14.25 8.31 -92.71 -0.77 13.48 15 19 H 0.40 19.90 7.90 -92.70 -0.73 19.17 15 20 H 0.07 2.36 7.97 -2.38 -0.02 2.34 15 21 H 0.12 3.76 8.14 -2.39 -0.02 3.74 15 22 H 0.06 1.35 7.67 -2.39 -0.02 1.33 15 23 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 24 H 0.09 1.54 8.14 -2.39 -0.02 1.52 15 25 H 0.08 1.53 8.14 -2.38 -0.02 1.51 15 26 H 0.04 1.16 8.14 -2.39 -0.02 1.14 15 27 H 0.10 2.24 8.14 -2.38 -0.02 2.22 15 28 H 0.35 14.98 6.75 -203.76 -1.38 13.60 15 Total: -1.00 -66.30 240.32 -0.47 -66.78 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: -0.93 Total: 34.59 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 3.92 Total: 6.79 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -5.45 Total: -119.12 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.04 Total: -34.52 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -66.30 -0.47 -66.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307114708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.855 kcal (2) G-P(sol) polarization free energy of solvation -66.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds