Wall clock time and date at job start Mon Mar 30 2020 20:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09010 * 109.46716 * 2 1 4 4 C 1.52996 * 109.47194 * 240.00017 * 2 1 3 5 5 O 1.42896 * 109.47117 * 304.99284 * 4 2 1 6 6 N 1.46902 * 109.47036 * 119.99151 * 2 1 3 7 7 C 1.46894 * 111.00449 * 300.00433 * 6 2 1 8 8 C 1.50699 * 109.47148 * 162.71913 * 7 6 2 9 9 H 1.08002 * 119.99735 * 354.70940 * 8 7 6 10 10 C 1.37878 * 119.99983 * 174.42643 * 8 7 6 11 11 N 1.31513 * 119.99916 * 0.28446 * 10 8 7 12 12 Si 1.86806 * 119.99956 * 180.27716 * 10 8 7 13 13 H 1.48488 * 109.47066 * 60.00305 * 12 10 8 14 14 H 1.48497 * 109.46731 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46693 * 300.00241 * 12 10 8 16 16 C 1.46899 * 110.99688 * 176.04966 * 6 2 1 17 17 C 1.53008 * 117.50043 * 265.92245 * 16 6 2 18 18 C 1.52999 * 117.49934 * 197.30040 * 16 6 2 19 19 H 1.09007 * 109.46717 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47505 * 299.99833 * 1 2 3 21 21 H 1.08997 * 109.47251 * 60.00626 * 1 2 3 22 22 H 1.08993 * 109.47575 * 64.99585 * 4 2 1 23 23 H 1.08997 * 109.46975 * 184.99683 * 4 2 1 24 24 H 0.96697 * 114.00305 * 180.02562 * 5 4 2 25 25 H 1.09005 * 109.47347 * 42.72023 * 7 6 2 26 26 H 1.08998 * 109.46993 * 282.72153 * 7 6 2 27 27 H 0.97000 * 120.00083 * 179.97438 * 11 10 8 28 28 H 1.08997 * 115.55171 * 51.62829 * 16 6 2 29 29 H 1.09003 * 117.49431 * 359.97438 * 17 16 6 30 30 H 1.08997 * 117.49724 * 145.02052 * 17 16 6 31 31 H 1.09004 * 117.50059 * 214.97522 * 18 16 6 32 32 H 1.09000 * 117.49793 * 0.02562 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.4704 -2.0304 -1.3093 6 7 2.0197 -0.6923 1.1996 7 6 1.5486 -0.0262 2.4211 8 6 1.6944 -0.9632 3.5923 9 1 2.0157 -1.9818 3.4322 10 6 1.4232 -0.5184 4.8689 11 7 1.0319 0.7220 5.0638 12 14 1.6113 -1.6777 6.3216 13 1 3.0164 -2.1517 6.3979 14 1 1.2611 -0.9619 7.5746 15 1 0.7051 -2.8412 6.1469 16 6 3.4851 -0.7943 1.1872 17 6 4.0994 -2.0747 0.6177 18 6 4.1301 -1.8162 2.1255 19 1 -0.3633 -1.0278 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 1.7516 -0.1584 -2.1369 23 1 3.1263 -0.7994 -1.2055 24 1 1.7507 -2.5464 -2.0775 25 1 0.5003 0.2487 2.3040 26 1 2.1419 0.8710 2.5975 27 1 0.8407 1.0348 5.9619 28 1 4.0199 0.1400 1.0164 29 1 3.4162 -2.8415 0.2527 30 1 5.0385 -1.9828 0.0722 31 1 5.0895 -1.5544 2.5717 32 1 3.4671 -2.4132 2.7517 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388469607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:35 Heat of formation + Delta-G solvation = -38.414307 kcal Electronic energy + Delta-G solvation = -13478.893196 eV Core-core repulsion = 11246.733458 eV Total energy + Delta-G solvation = -2232.159738 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.87464 -37.27330 -35.60969 -34.60150 -31.41086 -28.66311 -27.08955 -23.96706 -23.03407 -22.22732 -20.57494 -18.57855 -18.22891 -16.75560 -16.61990 -15.92308 -15.83760 -15.11678 -14.41466 -14.18272 -13.86061 -13.82653 -13.16312 -12.82650 -12.69256 -12.63411 -12.35319 -12.17052 -11.79314 -11.55577 -11.21233 -11.03571 -10.68286 -10.59288 -10.38794 -8.92291 -8.13790 -6.20733 1.40364 1.43624 1.50888 2.42615 3.08191 3.17243 3.21406 3.64461 4.11540 4.20835 4.22916 4.32040 4.44318 4.61560 4.64957 4.79663 4.88984 4.92521 4.98011 5.07975 5.19897 5.35201 5.37009 5.49973 5.51547 5.80091 6.16397 6.50006 6.74501 6.95234 7.17201 7.46619 8.96802 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039467 B = 0.011427 C = 0.009887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.283106 B = 2449.796423 C = 2831.343983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.071 3.929 3 H 0.033 0.967 4 C 0.097 3.903 5 O -0.572 6.572 6 N -0.503 5.503 7 C 0.204 3.796 8 C -0.505 4.505 9 H 0.068 0.932 10 C -0.002 4.002 11 N -0.939 5.939 12 Si 0.962 3.038 13 H -0.266 1.266 14 H -0.285 1.285 15 H -0.271 1.271 16 C 0.001 3.999 17 C -0.139 4.139 18 C -0.171 4.171 19 H 0.055 0.945 20 H 0.032 0.968 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.387 0.613 25 H 0.012 0.988 26 H -0.043 1.043 27 H 0.261 0.739 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -3.798 -12.103 13.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.038 4.038 3 H 0.051 0.949 4 C 0.019 3.981 5 O -0.378 6.378 6 N -0.228 5.228 7 C 0.078 3.922 8 C -0.544 4.544 9 H 0.086 0.914 10 C -0.199 4.199 11 N -0.581 5.581 12 Si 0.787 3.213 13 H -0.191 1.191 14 H -0.211 1.211 15 H -0.196 1.196 16 C -0.108 4.108 17 C -0.176 4.176 18 C -0.208 4.208 19 H 0.074 0.926 20 H 0.051 0.949 21 H 0.095 0.905 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.235 0.765 25 H 0.030 0.970 26 H -0.026 1.026 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.139 -3.950 -11.428 12.781 hybrid contribution 0.418 0.710 0.723 1.096 sum 4.557 -3.240 -10.705 12.078 Atomic orbital electron populations 1.21677 0.94417 1.01926 1.00750 1.21793 0.96379 0.94460 0.91141 0.94884 1.22086 0.96821 0.84059 0.95111 1.86615 1.72678 1.27404 1.51131 1.61888 1.07389 1.51966 1.01547 1.19470 0.93643 0.91693 0.87378 1.21553 1.43455 0.98085 0.91269 0.91438 1.25858 0.95439 0.96689 1.01869 1.70089 1.48172 1.17448 1.22399 0.85550 0.79002 0.78767 0.78021 1.19138 1.21103 1.19586 1.22123 0.88220 0.92993 1.07477 1.23059 1.01529 0.97870 0.95165 1.23005 1.00998 1.03061 0.93732 0.92614 0.94872 0.90515 0.91743 0.92722 0.76519 0.97044 1.02551 0.93036 0.91731 0.88609 0.86841 0.88934 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.82 71.98 0.64 -4.18 16 2 C 0.07 2.63 2.47 44.91 0.11 2.74 16 3 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 4 C 0.10 2.68 6.13 71.98 0.44 3.12 16 5 O -0.57 -16.07 12.32 -148.98 -1.84 -17.91 16 6 N -0.50 -22.55 4.40 -850.41 -3.74 -26.29 16 7 C 0.20 11.27 4.60 85.56 0.39 11.67 16 8 C -0.51 -29.32 8.03 25.60 0.21 -29.12 16 9 H 0.07 3.85 5.45 -2.91 -0.02 3.84 16 10 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 11 N -0.94 -58.18 13.29 21.45 0.28 -57.89 16 12 Si 0.96 45.64 29.54 68.60 2.03 47.66 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 14 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 15 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 16 C 0.00 0.04 3.94 44.92 0.18 0.21 16 17 C -0.14 -4.33 8.75 30.60 0.27 -4.06 16 18 C -0.17 -6.60 9.38 30.59 0.29 -6.31 16 19 H 0.05 2.19 7.56 -2.38 -0.02 2.17 16 20 H 0.03 1.39 6.08 -2.39 -0.01 1.37 16 21 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 22 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.05 1.41 5.92 -2.39 -0.01 1.40 16 24 H 0.39 6.54 9.12 -74.06 -0.68 5.86 16 25 H 0.01 0.69 5.59 -2.38 -0.01 0.67 16 26 H -0.04 -2.63 8.03 -2.39 -0.02 -2.65 16 27 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.10 3.09 7.74 -2.39 -0.02 3.07 16 30 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 32 H 0.08 3.75 5.60 -2.39 -0.01 3.74 16 Total: -1.00 -68.63 256.70 0.15 -68.48 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.43 Total: 11.51 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 2.98 Total: -25.57 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -3.45 Total: -84.18 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -1.84 Total: -17.91 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -68.63 0.15 -68.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388469607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.063 kcal (2) G-P(sol) polarization free energy of solvation -68.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds