Wall clock time and date at job start Mon Mar 30 2020 20:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99917 * 2 1 4 4 H 1.48506 * 109.47192 * 240.00170 * 3 2 1 5 5 H 1.48504 * 109.47067 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47137 * 120.00160 * 3 2 1 7 7 C 1.37881 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99888 * 186.43970 * 7 2 1 9 9 C 1.50693 * 120.00079 * 6.15098 * 7 2 1 10 10 C 1.53002 * 109.39345 * 297.26897 * 9 7 2 11 11 N 1.46899 * 109.46676 * 305.31403 * 10 9 7 12 12 C 1.52584 * 109.38719 * 57.06805 * 9 7 2 13 13 C 1.52409 * 110.82232 * 49.35084 * 12 9 7 14 14 C 1.53097 * 109.88830 * 70.76303 * 13 12 9 15 15 S 1.81754 * 108.83990 * 296.97924 * 14 13 12 16 16 C 1.53090 * 109.39343 * 177.46401 * 9 7 2 17 17 H 0.96996 * 120.00262 * 359.97438 * 1 2 3 18 18 H 1.09001 * 109.47252 * 65.31075 * 10 9 7 19 19 H 1.09003 * 109.47265 * 185.31088 * 10 9 7 20 20 H 1.00902 * 110.99484 * 174.11688 * 11 10 9 21 21 H 1.00900 * 111.00004 * 298.06219 * 11 10 9 22 22 H 1.09000 * 109.23034 * 169.79531 * 12 9 7 23 23 H 1.09008 * 109.22925 * 289.15027 * 12 9 7 24 24 H 1.08999 * 109.41961 * 310.63894 * 13 12 9 25 25 H 1.09002 * 109.34527 * 190.84139 * 13 12 9 26 26 H 1.08996 * 109.57556 * 177.17737 * 14 13 12 27 27 H 1.09001 * 109.57865 * 56.78788 * 14 13 12 28 28 H 1.09003 * 109.57576 * 62.68544 * 16 9 7 29 29 H 1.09000 * 109.58107 * 183.07375 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0795 -1.1970 0.1044 9 6 1.2577 -2.4953 -0.1409 10 6 0.3158 -2.6718 1.0518 11 7 1.0811 -2.5595 2.3007 12 6 0.4430 -2.4751 -1.4310 13 6 1.3049 -2.0372 -2.6092 14 6 2.3107 -3.1380 -2.9562 15 16 3.4248 -3.3824 -1.5411 16 6 2.2575 -3.6542 -0.1749 17 1 -0.4850 0.8400 0.0004 18 1 -0.4523 -1.8989 1.0257 19 1 -0.1548 -3.6537 1.0011 20 1 0.4689 -2.5766 3.1026 21 1 1.7794 -3.2851 2.3634 22 1 0.0508 -3.4737 -1.6236 23 1 -0.3885 -1.7790 -1.3196 24 1 1.8421 -1.1259 -2.3463 25 1 0.6667 -1.8451 -3.4717 26 1 2.8903 -2.8408 -3.8302 27 1 1.7787 -4.0657 -3.1667 28 1 2.8022 -3.6943 0.7684 29 1 1.7244 -4.5920 -0.3311 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260395770.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:48 Heat of formation + Delta-G solvation = -23.488012 kcal Electronic energy + Delta-G solvation = -12028.759936 eV Core-core repulsion = 10076.855749 eV Total energy + Delta-G solvation = -1951.904187 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.04772 -34.72167 -33.70691 -31.39384 -27.86277 -26.89484 -25.46139 -22.17937 -20.62234 -17.93844 -17.22653 -16.61662 -16.12747 -15.55387 -15.40287 -14.48884 -14.30859 -14.11747 -13.73056 -13.36162 -13.13060 -12.67929 -12.49519 -12.23096 -11.96374 -11.64246 -11.52082 -10.89775 -10.81816 -10.27438 -10.09099 -9.02286 -8.25851 -7.81318 -5.80541 1.20945 1.47733 1.49553 1.55252 1.92015 2.60467 3.47014 4.09744 4.19247 4.28759 4.39206 4.43396 4.65745 4.77261 4.81886 4.88374 4.99089 5.08975 5.35166 5.61363 5.76180 5.82205 5.92854 6.24961 6.51780 6.83095 7.00710 7.13274 7.77019 9.20175 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.030151 B = 0.018379 C = 0.015092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.437251 B = 1523.081656 C = 1854.807262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.034 3.966 3 Si 0.920 3.080 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.286 1.286 7 C -0.444 4.444 8 H 0.042 0.958 9 C 0.065 3.935 10 C 0.089 3.911 11 N -0.834 5.834 12 C -0.104 4.104 13 C -0.105 4.105 14 C -0.060 4.060 15 S -0.307 6.307 16 C -0.050 4.050 17 H 0.249 0.751 18 H 0.073 0.927 19 H -0.012 1.012 20 H 0.330 0.670 21 H 0.328 0.672 22 H 0.029 0.971 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.881 -6.512 -2.398 6.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.163 4.163 3 Si 0.750 3.250 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.483 4.483 8 H 0.060 0.940 9 C 0.063 3.937 10 C -0.044 4.044 11 N -0.363 5.363 12 C -0.142 4.142 13 C -0.143 4.143 14 C -0.208 4.208 15 S -0.080 6.080 16 C -0.198 4.198 17 H 0.058 0.942 18 H 0.091 0.909 19 H 0.006 0.994 20 H 0.142 0.858 21 H 0.141 0.859 22 H 0.047 0.953 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.124 0.876 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.115 -5.670 -2.682 6.619 hybrid contribution -1.333 0.229 0.403 1.411 sum 0.782 -5.441 -2.279 5.950 Atomic orbital electron populations 1.69870 1.06094 1.25485 1.53725 1.25081 0.95058 0.99926 0.96248 0.86216 0.78686 0.82192 0.77898 1.20653 1.22132 1.21274 1.20777 0.92183 0.90062 1.45280 0.93975 1.18339 0.91510 0.92166 0.91722 1.21714 0.96395 0.95869 0.90433 1.58456 1.18873 1.55342 1.03612 1.21292 0.99599 0.98094 0.95264 1.21467 0.97017 0.98398 0.97462 1.23341 0.98978 1.01876 0.96630 1.86142 1.19262 1.94972 1.07643 1.23500 0.98610 1.00524 0.97173 0.94151 0.90871 0.99405 0.85832 0.85931 0.95259 0.91619 0.91948 0.92233 0.87648 0.89666 0.89467 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.85 9.56 21.45 0.21 -48.64 15 2 C 0.03 1.78 4.70 84.66 0.40 2.18 15 3 Si 0.92 44.22 29.54 68.60 2.03 46.24 15 4 H -0.28 -13.37 7.11 99.48 0.71 -12.66 15 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 15 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 15 7 C -0.44 -22.50 5.10 25.60 0.13 -22.37 15 8 H 0.04 2.28 7.28 -2.91 -0.02 2.26 15 9 C 0.06 2.85 0.33 -53.04 -0.02 2.83 15 10 C 0.09 3.84 5.43 86.30 0.47 4.31 15 11 N -0.83 -33.01 8.98 -186.71 -1.68 -34.68 15 12 C -0.10 -4.46 4.12 30.26 0.12 -4.33 15 13 C -0.10 -4.16 5.58 30.43 0.17 -3.99 15 14 C -0.06 -2.05 6.45 72.01 0.46 -1.59 15 15 S -0.31 -11.88 21.14 -56.49 -1.19 -13.07 15 16 C -0.05 -1.94 5.05 72.01 0.36 -1.58 15 17 H 0.25 13.30 8.31 -92.71 -0.77 12.53 15 18 H 0.07 3.66 6.16 -2.39 -0.01 3.65 15 19 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 15 20 H 0.33 11.49 9.08 -89.69 -0.81 10.67 15 21 H 0.33 11.63 7.40 -89.69 -0.66 10.97 15 22 H 0.03 1.14 8.08 -2.39 -0.02 1.12 15 23 H 0.07 3.19 6.33 -2.38 -0.02 3.18 15 24 H 0.06 2.90 6.30 -2.39 -0.02 2.88 15 25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 15 26 H 0.11 3.16 8.14 -2.39 -0.02 3.15 15 27 H 0.08 2.57 8.14 -2.39 -0.02 2.55 15 28 H 0.09 3.38 6.69 -2.39 -0.02 3.37 15 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 Total: -1.00 -54.93 233.65 1.14 -53.79 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -0.33 Total: 20.91 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 2.10 Total: -24.55 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -1.47 Total: -83.33 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -11.88 SS G_CDS: -1.19 Total: -13.07 kcal Total: -54.93 1.14 -53.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260395770.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.303 kcal (2) G-P(sol) polarization free energy of solvation -54.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds