Wall clock time and date at job start Mon Mar 30 2020 20:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48501 * 109.47518 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47244 * 300.00251 * 3 2 1 6 6 H 1.48494 * 109.46971 * 60.00210 * 3 2 1 7 7 C 1.37874 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00667 * 178.15111 * 7 2 1 9 9 C 1.50711 * 119.99742 * 358.14476 * 7 2 1 10 10 C 1.53004 * 109.38855 * 298.67634 * 9 7 2 11 11 N 1.46895 * 109.46569 * 184.18291 * 10 9 7 12 12 C 1.52581 * 109.38927 * 178.87513 * 9 7 2 13 13 C 1.52581 * 110.72539 * 310.62326 * 12 9 7 14 14 C 1.53100 * 109.95724 * 289.32902 * 13 12 9 15 15 S 1.81741 * 108.84129 * 63.02462 * 14 13 12 16 16 C 1.53098 * 109.30641 * 58.42726 * 9 7 2 17 17 H 0.96997 * 119.99984 * 359.97438 * 1 2 3 18 18 H 1.08999 * 109.46756 * 304.18302 * 10 9 7 19 19 H 1.08997 * 109.47231 * 64.18268 * 10 9 7 20 20 H 1.00908 * 110.99961 * 174.01741 * 11 10 9 21 21 H 1.00901 * 111.00476 * 297.96573 * 11 10 9 22 22 H 1.09004 * 109.22266 * 190.30954 * 12 9 7 23 23 H 1.08992 * 109.22658 * 70.94517 * 12 9 7 24 24 H 1.09002 * 109.39273 * 169.17947 * 13 12 9 25 25 H 1.09006 * 109.30754 * 49.42712 * 13 12 9 26 26 H 1.08996 * 109.57298 * 303.21756 * 14 13 12 27 27 H 1.09005 * 109.68013 * 182.89610 * 14 13 12 28 28 H 1.09001 * 109.57630 * 297.26652 * 16 9 7 29 29 H 1.08999 * 109.57326 * 176.87812 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0841 -1.1943 -0.0307 9 6 1.2516 -2.4989 0.0411 10 6 0.4337 -2.5723 1.3321 11 7 -0.2216 -3.8839 1.4225 12 6 2.2436 -3.6575 0.0033 13 6 3.2506 -3.4695 -1.1275 14 6 2.5618 -3.6720 -2.4797 15 16 1.2851 -2.3949 -2.6851 16 6 0.3092 -2.5782 -1.1628 17 1 -0.4850 0.8400 0.0004 18 1 1.0939 -2.4362 2.1887 19 1 -0.3228 -1.7877 1.3281 20 1 -0.6882 -3.9946 2.3103 21 1 -0.8643 -4.0206 0.6568 22 1 1.7006 -4.5900 -0.1511 23 1 2.7756 -3.7057 0.9533 24 1 4.0561 -4.1959 -1.0193 25 1 3.6632 -2.4617 -1.0788 26 1 2.0997 -4.6586 -2.5100 27 1 3.2953 -3.5874 -3.2816 28 1 -0.4280 -1.7775 -1.1030 29 1 -0.1969 -3.5435 -1.1675 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260395772.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:50 Heat of formation + Delta-G solvation = -10.838180 kcal Electronic energy + Delta-G solvation = -11981.653737 eV Core-core repulsion = 10030.298087 eV Total energy + Delta-G solvation = -1951.355650 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.32960 -33.11874 -32.22951 -29.36139 -26.19937 -25.09937 -23.63102 -20.84044 -18.63946 -16.40902 -15.24709 -14.89696 -14.40086 -13.93616 -13.53328 -12.91538 -12.68395 -12.33408 -12.07187 -11.52278 -11.19179 -10.91413 -10.59870 -10.45842 -10.27867 -10.22174 -9.78058 -9.16815 -8.77598 -8.52315 -8.32979 -7.65622 -6.38012 -5.97793 -4.01862 3.00849 3.32048 3.41080 3.44233 3.85900 4.46255 5.26996 5.65537 5.66945 5.77758 6.03021 6.24372 6.35945 6.44129 6.52682 6.70050 6.87003 6.99864 7.07883 7.22456 7.29074 7.56167 7.70087 8.00576 8.07314 8.27475 8.46116 8.93618 9.61351 11.04512 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.029652 B = 0.018463 C = 0.014705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.048111 B = 1516.203282 C = 1903.667028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.484 4.484 8 H 0.062 0.938 9 C 0.076 3.924 10 C 0.072 3.928 11 N -0.859 5.859 12 C -0.095 4.095 13 C -0.121 4.121 14 C -0.075 4.075 15 S -0.282 6.282 16 C -0.050 4.050 17 H 0.258 0.742 18 H 0.048 0.952 19 H 0.058 0.942 20 H 0.319 0.681 21 H 0.328 0.672 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.128 0.872 29 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.092 -5.098 -0.498 5.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.215 1.215 7 C -0.522 4.522 8 H 0.080 0.920 9 C 0.074 3.926 10 C -0.059 4.059 11 N -0.387 5.387 12 C -0.133 4.133 13 C -0.159 4.159 14 C -0.224 4.224 15 S -0.055 6.055 16 C -0.199 4.199 17 H 0.068 0.932 18 H 0.066 0.934 19 H 0.076 0.924 20 H 0.129 0.871 21 H 0.139 0.861 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.146 0.854 29 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.555 -4.540 -1.464 5.017 hybrid contribution -0.302 0.670 1.067 1.296 sum 1.253 -3.870 -0.397 4.087 Atomic orbital electron populations 1.69697 1.05881 1.26145 1.51890 1.24818 0.94742 0.98867 0.94631 0.86548 0.80259 0.83996 0.77292 1.19846 1.21068 1.21450 1.21057 0.92923 0.89457 1.48809 0.91987 1.18227 0.91165 0.93447 0.89804 1.22000 0.97930 0.87497 0.98514 1.59066 1.37667 1.35957 1.06012 1.21318 0.96786 0.98636 0.96584 1.21777 0.97822 1.02790 0.93534 1.23207 0.99314 0.99039 1.00800 1.86169 1.36719 1.51396 1.31236 1.23716 1.00417 1.02382 0.93374 0.93158 0.93374 0.92352 0.87070 0.86099 0.93735 0.93314 0.93876 0.89459 0.91955 0.90022 0.85424 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.78 9.40 55.43 0.52 -23.26 15 2 C 0.07 1.82 5.14 -17.82 -0.09 1.73 15 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 15 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.88 7.11 56.52 0.40 -6.47 15 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 7 C -0.48 -12.34 6.23 -34.44 -0.21 -12.55 15 8 H 0.06 1.62 6.08 -52.49 -0.32 1.30 15 9 C 0.08 1.73 0.32 -155.82 -0.05 1.68 15 10 C 0.07 1.60 5.41 -3.82 -0.02 1.58 15 11 N -0.86 -15.90 8.82 -10.37 -0.09 -15.99 15 12 C -0.10 -2.00 4.17 -27.16 -0.11 -2.11 15 13 C -0.12 -2.36 5.58 -26.89 -0.15 -2.51 15 14 C -0.08 -1.42 6.45 37.21 0.24 -1.18 15 15 S -0.28 -6.30 21.43 -107.50 -2.30 -8.60 15 16 C -0.05 -1.16 4.66 37.21 0.17 -0.98 15 17 H 0.26 6.71 8.31 -40.82 -0.34 6.37 15 18 H 0.05 1.10 8.14 -51.93 -0.42 0.68 15 19 H 0.06 1.43 6.35 -51.93 -0.33 1.10 15 20 H 0.32 5.17 9.08 -39.29 -0.36 4.82 15 21 H 0.33 5.90 7.52 -39.29 -0.30 5.61 15 22 H 0.04 0.91 7.78 -51.93 -0.40 0.51 15 23 H 0.05 1.03 8.09 -51.93 -0.42 0.61 15 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.09 1.88 5.76 -51.93 -0.30 1.58 15 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 27 H 0.08 1.39 8.14 -51.93 -0.42 0.97 15 28 H 0.13 3.27 5.96 -51.93 -0.31 2.96 15 29 H 0.04 0.79 6.97 -51.93 -0.36 0.43 15 LS Contribution 232.96 15.07 3.51 3.51 Total: -1.00 -26.10 232.96 -7.53 -33.63 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -3.92 Total: 8.98 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -0.23 Total: -14.35 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.43 Total: -39.25 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -6.30 SS G_CDS: -2.30 Total: -8.60 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -26.10 -7.53 -33.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260395772.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.791 kcal (2) G-P(sol) polarization free energy of solvation -26.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds