Wall clock time and date at job start Mon Mar 30 2020 20:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48501 * 109.47518 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47244 * 300.00251 * 3 2 1 6 6 H 1.48494 * 109.46971 * 60.00210 * 3 2 1 7 7 C 1.37874 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00667 * 178.15111 * 7 2 1 9 9 C 1.50711 * 119.99742 * 358.14476 * 7 2 1 10 10 C 1.53004 * 109.38855 * 298.67634 * 9 7 2 11 11 N 1.46895 * 109.46569 * 184.18291 * 10 9 7 12 12 C 1.52581 * 109.38927 * 178.87513 * 9 7 2 13 13 C 1.52581 * 110.72539 * 310.62326 * 12 9 7 14 14 C 1.53100 * 109.95724 * 289.32902 * 13 12 9 15 15 S 1.81741 * 108.84129 * 63.02462 * 14 13 12 16 16 C 1.53098 * 109.30641 * 58.42726 * 9 7 2 17 17 H 0.96997 * 119.99984 * 359.97438 * 1 2 3 18 18 H 1.08999 * 109.46756 * 304.18302 * 10 9 7 19 19 H 1.08997 * 109.47231 * 64.18268 * 10 9 7 20 20 H 1.00908 * 110.99961 * 174.01741 * 11 10 9 21 21 H 1.00901 * 111.00476 * 297.96573 * 11 10 9 22 22 H 1.09004 * 109.22266 * 190.30954 * 12 9 7 23 23 H 1.08992 * 109.22658 * 70.94517 * 12 9 7 24 24 H 1.09002 * 109.39273 * 169.17947 * 13 12 9 25 25 H 1.09006 * 109.30754 * 49.42712 * 13 12 9 26 26 H 1.08996 * 109.57298 * 303.21756 * 14 13 12 27 27 H 1.09005 * 109.68013 * 182.89610 * 14 13 12 28 28 H 1.09001 * 109.57630 * 297.26652 * 16 9 7 29 29 H 1.08999 * 109.57326 * 176.87812 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0841 -1.1943 -0.0307 9 6 1.2516 -2.4989 0.0411 10 6 0.4337 -2.5723 1.3321 11 7 -0.2216 -3.8839 1.4225 12 6 2.2436 -3.6575 0.0033 13 6 3.2506 -3.4695 -1.1275 14 6 2.5618 -3.6720 -2.4797 15 16 1.2851 -2.3949 -2.6851 16 6 0.3092 -2.5782 -1.1628 17 1 -0.4850 0.8400 0.0004 18 1 1.0939 -2.4362 2.1887 19 1 -0.3228 -1.7877 1.3281 20 1 -0.6882 -3.9946 2.3103 21 1 -0.8643 -4.0206 0.6568 22 1 1.7006 -4.5900 -0.1511 23 1 2.7756 -3.7057 0.9533 24 1 4.0561 -4.1959 -1.0193 25 1 3.6632 -2.4617 -1.0788 26 1 2.0997 -4.6586 -2.5100 27 1 3.2953 -3.5874 -3.2816 28 1 -0.4280 -1.7775 -1.1030 29 1 -0.1969 -3.5435 -1.1675 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260395772.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:50 Heat of formation + Delta-G solvation = -27.000631 kcal Electronic energy + Delta-G solvation = -11982.354593 eV Core-core repulsion = 10030.298087 eV Total energy + Delta-G solvation = -1952.056506 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.07780 -34.74694 -34.09157 -31.07880 -27.93449 -26.96228 -25.37575 -22.45384 -20.48341 -18.20530 -17.01746 -16.75971 -16.09629 -15.56232 -15.30820 -14.56161 -14.41360 -14.07436 -13.69477 -13.35374 -12.92869 -12.81952 -12.42509 -12.22578 -12.03344 -11.90697 -11.60467 -10.91772 -10.58844 -10.39983 -10.13218 -9.28828 -8.14252 -7.94798 -6.02992 1.36264 1.41361 1.47147 1.53693 2.14640 2.50963 3.29528 4.08212 4.15058 4.24114 4.47611 4.57922 4.70816 4.80338 4.86058 5.05614 5.14881 5.29505 5.40059 5.43819 5.57662 5.71420 5.90367 6.10359 6.36759 6.58970 6.79076 6.99567 7.60816 9.03897 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.029652 B = 0.018463 C = 0.014705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.048111 B = 1516.203282 C = 1903.667028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.032 3.968 3 Si 0.932 3.068 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.487 4.487 8 H 0.053 0.947 9 C 0.070 3.930 10 C 0.084 3.916 11 N -0.848 5.848 12 C -0.090 4.090 13 C -0.118 4.118 14 C -0.061 4.061 15 S -0.326 6.326 16 C -0.039 4.039 17 H 0.254 0.746 18 H 0.036 0.964 19 H 0.031 0.969 20 H 0.336 0.664 21 H 0.333 0.667 22 H 0.052 0.948 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.901 -6.435 -0.661 6.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.166 4.166 3 Si 0.761 3.239 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.526 4.526 8 H 0.071 0.929 9 C 0.068 3.932 10 C -0.048 4.048 11 N -0.377 5.377 12 C -0.128 4.128 13 C -0.157 4.157 14 C -0.209 4.209 15 S -0.099 6.099 16 C -0.187 4.187 17 H 0.064 0.936 18 H 0.055 0.945 19 H 0.049 0.951 20 H 0.147 0.853 21 H 0.145 0.855 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.363 -5.888 -1.616 6.547 hybrid contribution -0.535 1.037 1.120 1.617 sum 1.828 -4.850 -0.497 5.207 Atomic orbital electron populations 1.69823 1.06477 1.26084 1.52706 1.25307 0.95306 1.00890 0.95118 0.85890 0.79527 0.81723 0.76766 1.19586 1.21865 1.21313 1.21255 0.92643 0.90731 1.47939 0.92906 1.18263 0.91653 0.93279 0.90051 1.21688 0.97099 0.88328 0.97723 1.58947 1.38095 1.33403 1.07249 1.21236 0.96599 0.97832 0.97100 1.21713 0.98268 1.02424 0.93264 1.23282 0.98254 0.98148 1.01211 1.86283 1.38653 1.53879 1.31116 1.23484 0.99887 1.01832 0.93521 0.93639 0.94549 0.95074 0.85293 0.85489 0.92931 0.93747 0.90564 0.91786 0.90035 0.87702 0.88379 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.89 9.40 21.45 0.20 -48.69 15 2 C 0.03 1.68 5.14 84.65 0.44 2.11 15 3 Si 0.93 43.40 29.54 68.60 2.03 45.43 15 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 15 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 15 6 H -0.29 -13.19 7.11 99.48 0.71 -12.48 15 7 C -0.49 -24.68 6.23 25.60 0.16 -24.52 15 8 H 0.05 2.74 6.08 -2.91 -0.02 2.72 15 9 C 0.07 3.13 0.32 -53.03 -0.02 3.11 15 10 C 0.08 3.67 5.41 86.31 0.47 4.14 15 11 N -0.85 -29.87 8.82 -186.72 -1.65 -31.52 15 12 C -0.09 -3.55 4.17 30.32 0.13 -3.42 15 13 C -0.12 -4.26 5.58 30.49 0.17 -4.09 15 14 C -0.06 -2.10 6.45 72.02 0.46 -1.63 15 15 S -0.33 -14.15 21.43 -56.49 -1.21 -15.36 15 16 C -0.04 -1.74 4.66 72.01 0.34 -1.41 15 17 H 0.25 13.42 8.31 -92.71 -0.77 12.65 15 18 H 0.04 1.64 8.14 -2.39 -0.02 1.62 15 19 H 0.03 1.53 6.35 -2.39 -0.02 1.52 15 20 H 0.34 10.21 9.08 -89.69 -0.81 9.39 15 21 H 0.33 11.38 7.52 -89.69 -0.67 10.70 15 22 H 0.05 1.98 7.78 -2.38 -0.02 1.97 15 23 H 0.04 1.77 8.09 -2.39 -0.02 1.75 15 24 H 0.08 2.28 8.14 -2.39 -0.02 2.26 15 25 H 0.06 2.64 5.76 -2.38 -0.01 2.62 15 26 H 0.08 2.54 8.14 -2.39 -0.02 2.52 15 27 H 0.10 3.16 8.14 -2.39 -0.02 3.14 15 28 H 0.10 5.07 5.96 -2.39 -0.01 5.05 15 29 H 0.05 2.07 6.97 -2.39 -0.02 2.05 15 Total: -1.00 -54.40 232.96 1.18 -53.22 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.33 Total: 22.65 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 2.14 Total: -25.73 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -1.45 Total: -80.21 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -14.15 SS G_CDS: -1.21 Total: -15.36 kcal Total: -54.40 1.18 -53.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260395772.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.220 kcal (2) G-P(sol) polarization free energy of solvation -54.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds