Wall clock time and date at job start Mon Mar 30 2020 20:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38276 * 119.65811 * 2 1 4 4 C 1.39863 * 120.19209 * 180.24801 * 3 2 1 5 5 C 1.46556 * 133.88086 * 180.34983 * 4 3 2 6 6 C 1.34314 * 106.83598 * 179.55242 * 5 4 3 7 7 N 1.36715 * 109.81233 * 359.80330 * 6 5 4 8 8 H 0.97000 * 124.99424 * 179.97438 * 7 6 5 9 9 C 1.36958 * 110.00695 * 359.97438 * 7 6 5 10 10 C 1.41476 * 133.41966 * 180.02562 * 9 7 6 11 11 C 1.40974 * 120.29510 * 359.97438 * 10 9 7 12 12 H 1.08001 * 120.00657 * 24.65745 * 11 10 9 13 13 C 1.39951 * 119.99634 * 204.65853 * 11 10 9 14 14 N 1.30854 * 120.00049 * 17.89660 * 13 11 10 15 15 Si 1.86796 * 119.99974 * 197.89900 * 13 11 10 16 16 H 1.48500 * 109.47072 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47117 * 120.00005 * 15 13 11 18 18 H 1.48506 * 109.47425 * 239.99678 * 15 13 11 19 19 C 1.37921 * 119.65721 * 179.97438 * 2 1 3 20 20 H 1.09004 * 109.46925 * 89.99959 * 1 2 3 21 21 H 1.09001 * 109.47408 * 209.99746 * 1 2 3 22 22 H 1.08997 * 109.47253 * 330.00156 * 1 2 3 23 23 H 1.07997 * 119.90109 * 359.97438 * 3 2 1 24 24 H 1.08003 * 126.57857 * 359.35464 * 5 4 3 25 25 H 1.07998 * 125.09066 * 179.79858 * 6 5 4 26 26 H 0.97006 * 120.00064 * 180.02562 * 14 13 11 27 27 H 1.08004 * 119.81955 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.2016 0.0000 4 6 3.5898 1.2147 -0.0052 5 6 4.5958 2.2804 -0.0003 6 6 5.7977 1.6808 0.0002 7 7 5.6382 0.3230 0.0004 8 1 6.3625 -0.3222 0.0004 9 6 4.3054 0.0078 0.0006 10 6 3.5956 -1.2160 0.0013 11 6 4.2918 -2.4419 0.0015 12 1 5.2977 -2.4917 0.3913 13 6 3.6792 -3.5944 -0.5036 14 7 2.6317 -3.4915 -1.2810 15 14 4.3570 -5.2797 -0.0678 16 1 5.5378 -5.1241 0.8192 17 1 3.3113 -6.0677 0.6329 18 1 4.7609 -5.9871 -1.3095 19 6 2.1895 -1.1985 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6441 2.1327 -0.0004 24 1 4.4069 3.3438 -0.0006 25 1 6.7477 2.1944 0.0004 26 1 2.2069 -4.2904 -1.6308 27 1 1.6409 -2.1289 0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260576373.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:04 Heat of formation + Delta-G solvation = 37.690918 kcal Electronic energy + Delta-G solvation = -12222.601600 eV Core-core repulsion = 10137.906379 eV Total energy + Delta-G solvation = -2084.695221 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.80976 -35.98561 -33.76171 -30.68354 -30.01552 -27.52372 -25.58308 -24.79584 -21.04294 -19.70988 -19.24757 -17.24396 -16.40253 -14.89391 -14.79514 -13.48583 -13.24081 -13.03164 -12.58904 -12.37280 -12.22944 -11.68498 -11.49359 -11.31892 -10.98133 -10.71061 -10.52599 -9.88026 -9.72640 -9.35162 -9.13822 -8.24526 -6.86034 -6.67613 -6.56217 -4.22541 2.55228 3.01857 3.06302 3.10522 3.21991 3.86026 3.92680 4.36316 4.70135 5.67240 5.71123 6.12759 6.24862 6.32922 6.48774 6.55540 6.74703 6.77841 6.86814 7.07086 7.20619 7.43762 7.56477 7.77926 7.91316 8.19603 8.29762 8.34998 8.65431 8.73248 8.88973 9.02277 10.20049 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.031707 B = 0.013482 C = 0.009735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.876744 B = 2076.292997 C = 2875.549813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.074 4.074 3 C -0.212 4.212 4 C -0.080 4.080 5 C -0.234 4.234 6 C 0.021 3.979 7 N -0.584 5.584 8 H 0.403 0.597 9 C 0.021 3.979 10 C 0.118 3.882 11 C -0.467 4.467 12 H 0.070 0.930 13 C 0.077 3.923 14 N -0.787 5.787 15 Si 0.905 3.095 16 H -0.262 1.262 17 H -0.271 1.271 18 H -0.275 1.275 19 C -0.183 4.183 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.047 0.953 23 H 0.087 0.913 24 H 0.125 0.875 25 H 0.150 0.850 26 H 0.279 0.721 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 2.429 1.520 3.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.074 4.074 3 C -0.232 4.232 4 C -0.084 4.084 5 C -0.262 4.262 6 C -0.108 4.108 7 N -0.184 5.184 8 H 0.238 0.762 9 C -0.085 4.085 10 C 0.114 3.886 11 C -0.496 4.496 12 H 0.089 0.911 13 C -0.141 4.141 14 N -0.413 5.413 15 Si 0.729 3.271 16 H -0.186 1.186 17 H -0.196 1.196 18 H -0.201 1.201 19 C -0.205 4.205 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.105 0.895 24 H 0.143 0.857 25 H 0.167 0.833 26 H 0.090 0.910 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.927 2.190 1.373 3.224 hybrid contribution 0.696 -1.027 0.039 1.242 sum 2.623 1.163 1.412 3.198 Atomic orbital electron populations 1.20601 0.93875 1.00462 1.00513 1.19320 0.93800 0.93530 1.00797 1.19569 0.91207 0.95552 1.16900 1.18860 0.92948 0.91668 1.04969 1.21458 0.91637 0.97188 1.15878 1.21415 0.98517 0.83220 1.07633 1.41337 1.06580 1.05708 1.64799 0.76177 1.18629 0.82345 0.95520 1.11976 1.16729 0.91729 0.88758 0.91378 1.19313 1.01065 0.92667 1.36586 0.91148 1.25810 0.94431 1.01152 0.92685 1.69865 1.18013 1.31327 1.22058 0.86324 0.79962 0.81590 0.79190 1.18627 1.19628 1.20076 1.20724 0.92717 0.96007 1.11005 0.92861 0.92955 0.93441 0.89502 0.85688 0.83266 0.90977 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.94 9.99 36.01 0.36 -1.58 15 2 C -0.07 -1.80 5.87 -104.72 -0.61 -2.41 15 3 C -0.21 -5.14 9.74 -38.96 -0.38 -5.52 15 4 C -0.08 -1.98 6.37 -105.16 -0.67 -2.65 15 5 C -0.23 -4.87 11.10 -37.61 -0.42 -5.29 15 6 C 0.02 0.39 11.82 -16.76 -0.20 0.19 15 7 N -0.58 -12.33 6.03 -10.34 -0.06 -12.40 15 8 H 0.40 7.49 8.96 -40.82 -0.37 7.12 15 9 C 0.02 0.53 7.00 -83.57 -0.58 -0.06 15 10 C 0.12 3.20 5.58 -106.73 -0.60 2.60 15 11 C -0.47 -12.30 9.04 -37.90 -0.34 -12.64 15 12 H 0.07 1.76 7.91 -52.49 -0.42 1.35 15 13 C 0.08 1.93 5.13 -17.33 -0.09 1.85 15 14 N -0.79 -20.45 10.96 55.55 0.61 -19.84 15 15 Si 0.90 18.60 29.60 -169.99 -5.03 13.57 15 16 H -0.26 -5.34 7.11 56.52 0.40 -4.94 15 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 18 H -0.28 -5.57 7.11 56.52 0.40 -5.17 15 19 C -0.18 -4.89 8.31 -38.80 -0.32 -5.21 15 20 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.05 0.98 8.08 -51.93 -0.42 0.57 15 22 H 0.05 0.83 8.08 -51.93 -0.42 0.41 15 23 H 0.09 1.91 8.06 -52.49 -0.42 1.49 15 24 H 0.13 2.25 8.06 -52.48 -0.42 1.82 15 25 H 0.15 2.08 8.06 -52.49 -0.42 1.66 15 26 H 0.28 6.57 8.30 -40.82 -0.34 6.23 15 27 H 0.12 3.29 6.15 -52.48 -0.32 2.97 15 LS Contribution 237.64 15.07 3.58 3.58 Total: -1.00 -29.30 237.64 -7.52 -36.82 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -2.77 Total: 8.99 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: -3.85 Total: -30.73 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.55 Total: -32.23 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.30 -7.52 -36.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260576373.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.512 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds