Wall clock time and date at job start Mon Mar 30 2020 20:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38276 * 119.65811 * 2 1 4 4 C 1.39863 * 120.19209 * 180.24801 * 3 2 1 5 5 C 1.46556 * 133.88086 * 180.34983 * 4 3 2 6 6 C 1.34314 * 106.83598 * 179.55242 * 5 4 3 7 7 N 1.36715 * 109.81233 * 359.80330 * 6 5 4 8 8 H 0.97000 * 124.99424 * 179.97438 * 7 6 5 9 9 C 1.36958 * 110.00695 * 359.97438 * 7 6 5 10 10 C 1.41476 * 133.41966 * 180.02562 * 9 7 6 11 11 C 1.40974 * 120.29510 * 359.97438 * 10 9 7 12 12 H 1.08001 * 120.00657 * 24.65745 * 11 10 9 13 13 C 1.39951 * 119.99634 * 204.65853 * 11 10 9 14 14 N 1.30854 * 120.00049 * 17.89660 * 13 11 10 15 15 Si 1.86796 * 119.99974 * 197.89900 * 13 11 10 16 16 H 1.48500 * 109.47072 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47117 * 120.00005 * 15 13 11 18 18 H 1.48506 * 109.47425 * 239.99678 * 15 13 11 19 19 C 1.37921 * 119.65721 * 179.97438 * 2 1 3 20 20 H 1.09004 * 109.46925 * 89.99959 * 1 2 3 21 21 H 1.09001 * 109.47408 * 209.99746 * 1 2 3 22 22 H 1.08997 * 109.47253 * 330.00156 * 1 2 3 23 23 H 1.07997 * 119.90109 * 359.97438 * 3 2 1 24 24 H 1.08003 * 126.57857 * 359.35464 * 5 4 3 25 25 H 1.07998 * 125.09066 * 179.79858 * 6 5 4 26 26 H 0.97006 * 120.00064 * 180.02562 * 14 13 11 27 27 H 1.08004 * 119.81955 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.2016 0.0000 4 6 3.5898 1.2147 -0.0052 5 6 4.5958 2.2804 -0.0003 6 6 5.7977 1.6808 0.0002 7 7 5.6382 0.3230 0.0004 8 1 6.3625 -0.3222 0.0004 9 6 4.3054 0.0078 0.0006 10 6 3.5956 -1.2160 0.0013 11 6 4.2918 -2.4419 0.0015 12 1 5.2977 -2.4917 0.3913 13 6 3.6792 -3.5944 -0.5036 14 7 2.6317 -3.4915 -1.2810 15 14 4.3570 -5.2797 -0.0678 16 1 5.5378 -5.1241 0.8192 17 1 3.3113 -6.0677 0.6329 18 1 4.7609 -5.9871 -1.3095 19 6 2.1895 -1.1985 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6441 2.1327 -0.0004 24 1 4.4069 3.3438 -0.0006 25 1 6.7477 2.1944 0.0004 26 1 2.2069 -4.2904 -1.6308 27 1 1.6409 -2.1289 0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260576373.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:04 Heat of formation + Delta-G solvation = 20.882968 kcal Electronic energy + Delta-G solvation = -12223.330447 eV Core-core repulsion = 10137.906379 eV Total energy + Delta-G solvation = -2085.424069 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.52989 -37.79096 -35.63117 -32.51736 -31.72246 -29.25379 -27.43687 -26.57797 -22.88035 -21.44689 -20.95400 -19.04535 -18.24866 -16.68160 -16.50614 -15.28494 -14.97583 -14.76527 -14.35016 -13.97779 -13.77834 -13.45778 -13.15598 -13.10703 -12.66490 -12.44479 -12.17431 -11.71619 -11.52804 -11.19733 -10.99099 -10.03492 -8.72923 -8.49591 -8.36583 -6.19349 0.77911 1.31267 1.36558 1.42988 1.51444 2.15760 2.21080 2.76379 2.83013 3.75349 4.25191 4.49318 4.59435 4.72622 4.80574 4.96919 5.02915 5.12497 5.16873 5.20491 5.44550 5.63987 5.68961 5.95218 6.09893 6.34085 6.41762 6.48820 6.79983 6.88433 7.11126 7.16625 8.35710 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.031707 B = 0.013482 C = 0.009735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.876744 B = 2076.292997 C = 2875.549813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.087 4.087 3 C -0.224 4.224 4 C -0.107 4.107 5 C -0.256 4.256 6 C 0.049 3.951 7 N -0.583 5.583 8 H 0.414 0.586 9 C -0.013 4.013 10 C 0.088 3.912 11 C -0.497 4.497 12 H 0.073 0.927 13 C 0.034 3.966 14 N -0.821 5.821 15 Si 0.982 3.018 16 H -0.258 1.258 17 H -0.266 1.266 18 H -0.266 1.266 19 C -0.215 4.215 20 H 0.061 0.939 21 H 0.054 0.946 22 H 0.072 0.928 23 H 0.108 0.892 24 H 0.154 0.846 25 H 0.208 0.792 26 H 0.287 0.713 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 3.112 1.758 4.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.244 4.244 4 C -0.111 4.111 5 C -0.282 4.282 6 C -0.080 4.080 7 N -0.185 5.185 8 H 0.250 0.750 9 C -0.119 4.119 10 C 0.084 3.916 11 C -0.527 4.527 12 H 0.091 0.909 13 C -0.180 4.180 14 N -0.447 5.447 15 Si 0.802 3.198 16 H -0.182 1.182 17 H -0.191 1.191 18 H -0.191 1.191 19 C -0.236 4.236 20 H 0.080 0.920 21 H 0.073 0.927 22 H 0.091 0.909 23 H 0.126 0.874 24 H 0.172 0.828 25 H 0.224 0.776 26 H 0.097 0.903 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.120 2.891 1.610 4.548 hybrid contribution 0.367 -1.109 -0.050 1.169 sum 3.487 1.781 1.560 4.215 Atomic orbital electron populations 1.20598 0.90972 1.01840 1.01471 1.19763 0.96187 0.92945 0.99930 1.19934 0.91745 0.96239 1.16460 1.19473 0.93861 0.93079 1.04711 1.21844 0.91187 0.98030 1.17134 1.22295 1.00335 0.81900 1.03444 1.41451 1.05449 1.07165 1.64386 0.75004 1.18782 0.84429 0.95355 1.13333 1.17119 0.92427 0.90100 0.91914 1.19568 1.01577 0.93574 1.37933 0.90866 1.26707 0.94564 1.04851 0.91922 1.69933 1.19234 1.32794 1.22761 0.85174 0.79268 0.76238 0.79076 1.18166 1.19061 1.19131 1.20741 0.93115 0.96263 1.13500 0.91984 0.92665 0.90944 0.87437 0.82844 0.77580 0.90280 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.62 9.99 71.24 0.71 -2.91 15 2 C -0.09 -4.34 5.87 -19.93 -0.12 -4.46 15 3 C -0.22 -10.83 9.74 22.67 0.22 -10.61 15 4 C -0.11 -5.21 6.37 -20.21 -0.13 -5.34 15 5 C -0.26 -9.97 11.10 23.54 0.26 -9.71 15 6 C 0.05 1.66 11.82 83.04 0.98 2.64 15 7 N -0.58 -23.83 6.03 -186.61 -1.12 -24.95 15 8 H 0.41 14.83 8.96 -92.71 -0.83 14.00 15 9 C -0.01 -0.67 7.00 39.64 0.28 -0.39 15 10 C 0.09 4.94 5.58 -21.23 -0.12 4.82 15 11 C -0.50 -26.94 9.04 23.36 0.21 -26.73 15 12 H 0.07 3.75 7.91 -2.91 -0.02 3.72 15 13 C 0.03 1.76 5.13 85.25 0.44 2.20 15 14 N -0.82 -43.92 10.96 21.83 0.24 -43.68 15 15 Si 0.98 38.45 29.60 68.60 2.03 40.48 15 16 H -0.26 -9.81 7.11 99.48 0.71 -9.10 15 17 H -0.27 -10.09 7.11 99.48 0.71 -9.39 15 18 H -0.27 -9.98 7.11 99.48 0.71 -9.27 15 19 C -0.21 -11.95 8.31 22.78 0.19 -11.76 15 20 H 0.06 2.30 8.14 -2.38 -0.02 2.28 15 21 H 0.05 2.09 8.08 -2.39 -0.02 2.07 15 22 H 0.07 2.43 8.08 -2.39 -0.02 2.42 15 23 H 0.11 4.60 8.06 -2.91 -0.02 4.57 15 24 H 0.15 4.97 8.06 -2.91 -0.02 4.95 15 25 H 0.21 4.53 8.06 -2.91 -0.02 4.51 15 26 H 0.29 13.80 8.30 -92.70 -0.77 13.03 15 27 H 0.10 5.91 6.15 -2.91 -0.02 5.89 15 Total: -1.00 -65.14 237.64 4.42 -60.72 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.35 Total: 29.68 kcal Atomic # 6 Polarization: -65.17 SS G_CDS: 2.93 Total: -62.25 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -0.89 Total: -68.63 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -65.14 4.42 -60.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260576373.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.604 kcal (2) G-P(sol) polarization free energy of solvation -65.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds