Wall clock time and date at job start Mon Mar 30 2020 20:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00274 * 2 1 4 4 H 1.48502 * 109.46740 * 270.00076 * 3 2 1 5 5 H 1.48502 * 109.47220 * 29.99756 * 3 2 1 6 6 H 1.48500 * 109.47129 * 150.00044 * 3 2 1 7 7 C 1.37877 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00117 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99851 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.47087 * 300.00203 * 9 7 2 11 11 N 1.46905 * 109.47121 * 60.00006 * 9 7 2 12 12 C 1.52998 * 109.47064 * 179.97438 * 9 7 2 13 13 H 1.09003 * 109.39264 * 300.19443 * 12 9 7 14 14 C 1.52583 * 109.39030 * 180.49490 * 12 9 7 15 15 C 1.52581 * 110.72822 * 169.17928 * 14 12 9 16 16 C 1.53090 * 109.95837 * 70.67087 * 15 14 12 17 17 S 1.81739 * 108.84246 * 296.97714 * 16 15 14 18 18 C 1.53099 * 109.39315 * 60.00277 * 12 9 7 19 19 H 0.97003 * 120.00069 * 359.97438 * 1 2 3 20 20 H 1.00901 * 110.99869 * 60.00289 * 11 9 7 21 21 H 1.00896 * 110.99543 * 183.95412 * 11 9 7 22 22 H 1.09004 * 109.22407 * 289.49784 * 14 12 9 23 23 H 1.09005 * 109.22852 * 48.85422 * 14 12 9 24 24 H 1.09008 * 109.38751 * 310.51935 * 15 14 12 25 25 H 1.09003 * 109.31009 * 190.77496 * 15 14 12 26 26 H 1.09004 * 109.57741 * 177.16903 * 16 15 14 27 27 H 1.09008 * 109.68186 * 56.85203 * 16 15 14 28 28 H 1.09003 * 109.56846 * 302.98035 * 18 12 9 29 29 H 1.08997 * 109.57529 * 63.22779 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8752 -0.6805 -0.8888 11 7 4.0007 -0.5014 1.2006 12 6 4.0214 -2.6366 0.0023 13 1 3.6542 -3.1496 0.8912 14 6 5.5472 -2.6346 0.0153 15 6 6.0868 -4.0361 0.2847 16 6 5.8379 -4.9343 -0.9297 17 16 4.0455 -5.0932 -1.1847 18 6 3.5106 -3.3574 -1.2481 19 1 -0.4850 0.8401 0.0004 20 1 3.6769 -0.9588 2.0397 21 1 5.0072 -0.4314 1.1924 22 1 5.9139 -2.2884 -0.9511 23 1 5.8986 -1.9586 0.7949 24 1 5.5832 -4.4566 1.1552 25 1 7.1579 -3.9787 0.4790 26 1 6.2700 -5.9189 -0.7505 27 1 6.2948 -4.4905 -1.8144 28 1 2.4219 -3.3115 -1.2768 29 1 3.9198 -2.8793 -2.1380 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260625026.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:13 Heat of formation + Delta-G solvation = -12.396166 kcal Electronic energy + Delta-G solvation = -11536.747569 eV Core-core repulsion = 9585.324361 eV Total energy + Delta-G solvation = -1951.423209 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.67896 -34.01473 -31.79630 -30.35759 -27.12213 -25.77449 -23.05117 -21.04138 -19.35798 -16.85148 -16.28062 -15.08455 -14.67965 -14.15557 -14.01360 -13.49540 -13.11988 -12.76259 -12.54552 -12.15730 -11.72029 -11.09076 -11.04221 -10.76352 -10.70614 -10.47597 -9.84112 -9.73104 -9.31693 -8.98916 -8.49996 -7.42637 -7.06321 -5.98890 -4.08487 2.15133 2.93956 3.51344 3.62000 3.93358 4.72157 4.85913 4.96019 5.18372 5.30411 5.40898 5.50803 5.64909 5.77422 5.88542 5.93207 6.07048 6.20783 6.27169 6.49372 6.58127 6.67241 7.14123 7.65386 8.19588 8.34843 8.71871 9.00784 9.66970 11.10840 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.052677 B = 0.011008 C = 0.009621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.417165 B = 2542.960405 C = 2909.608720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.083 3.917 3 Si 0.866 3.134 4 H -0.299 1.299 5 H -0.306 1.306 6 H -0.193 1.193 7 C -0.526 4.526 8 H 0.071 0.929 9 C 0.195 3.805 10 H 0.034 0.966 11 N -0.837 5.837 12 C -0.105 4.105 13 H 0.073 0.927 14 C -0.130 4.130 15 C -0.118 4.118 16 C -0.078 4.078 17 S -0.302 6.302 18 C -0.049 4.049 19 H 0.262 0.738 20 H 0.329 0.671 21 H 0.304 0.696 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.442 -5.983 -0.205 13.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.121 4.121 3 Si 0.694 3.306 4 H -0.227 1.227 5 H -0.233 1.233 6 H -0.114 1.114 7 C -0.564 4.564 8 H 0.089 0.911 9 C 0.084 3.916 10 H 0.052 0.948 11 N -0.366 5.366 12 C -0.127 4.127 13 H 0.091 0.909 14 C -0.168 4.168 15 C -0.157 4.157 16 C -0.226 4.226 17 S -0.075 6.075 18 C -0.197 4.197 19 H 0.071 0.929 20 H 0.142 0.858 21 H 0.117 0.883 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.139 0.861 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.273 -6.213 -0.574 12.884 hybrid contribution 1.349 0.996 0.175 1.686 sum 12.622 -5.217 -0.399 13.663 Atomic orbital electron populations 1.69972 1.06994 1.27277 1.49577 1.25013 0.94474 1.00167 0.92408 0.87210 0.84620 0.81149 0.77631 1.22681 1.23311 1.11450 1.20870 0.88049 0.94326 1.53148 0.91138 1.19459 0.96319 0.86111 0.89705 0.94819 1.60060 1.12369 1.58170 1.06027 1.22037 0.92732 1.00768 0.97143 0.90854 1.21699 0.97192 0.96044 1.01875 1.21693 1.00801 0.95768 0.97471 1.23338 0.94907 1.03249 1.01099 1.86755 1.08014 1.16678 1.96050 1.23549 1.05842 0.89595 1.00694 0.92897 0.85773 0.88347 0.92365 0.91515 0.90921 0.91729 0.88718 0.90479 0.86138 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.96 55.43 0.77 -26.92 15 2 C 0.08 2.38 5.47 -17.82 -0.10 2.28 15 3 Si 0.87 21.54 26.94 -169.99 -4.58 16.96 15 4 H -0.30 -7.59 7.11 56.52 0.40 -7.19 15 5 H -0.31 -7.88 7.11 56.52 0.40 -7.48 15 6 H -0.19 -4.41 5.17 56.52 0.29 -4.12 15 7 C -0.53 -14.09 8.54 -34.44 -0.29 -14.38 15 8 H 0.07 2.06 6.96 -52.48 -0.37 1.70 15 9 C 0.20 4.19 1.76 -68.86 -0.12 4.06 15 10 H 0.03 0.76 7.57 -51.93 -0.39 0.37 15 11 N -0.84 -16.45 5.71 -5.65 -0.03 -16.48 15 12 C -0.10 -1.89 1.74 -90.78 -0.16 -2.04 15 13 H 0.07 1.42 8.05 -51.93 -0.42 1.01 15 14 C -0.13 -1.89 4.83 -27.16 -0.13 -2.02 15 15 C -0.12 -1.49 5.75 -26.90 -0.15 -1.65 15 16 C -0.08 -1.00 6.45 37.20 0.24 -0.76 15 17 S -0.30 -4.97 22.33 -107.50 -2.40 -7.37 15 18 C -0.05 -0.89 5.53 37.21 0.21 -0.69 15 19 H 0.26 7.66 8.31 -40.82 -0.34 7.32 15 20 H 0.33 6.35 8.99 -39.29 -0.35 5.99 15 21 H 0.30 5.09 7.13 -39.29 -0.28 4.81 15 22 H 0.06 0.84 8.08 -51.93 -0.42 0.42 15 23 H 0.07 0.91 6.19 -51.93 -0.32 0.59 15 24 H 0.07 0.97 8.05 -51.92 -0.42 0.55 15 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 26 H 0.09 1.06 8.14 -51.93 -0.42 0.64 15 27 H 0.08 0.94 8.14 -51.92 -0.42 0.52 15 28 H 0.12 2.53 6.53 -51.93 -0.34 2.19 15 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 LS Contribution 236.82 15.07 3.57 3.57 Total: -1.00 -29.55 236.82 -7.42 -36.98 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -4.24 Total: 8.46 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.51 Total: -15.19 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.74 Total: -43.40 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.58 Total: 16.96 kcal Atomic # 16 Polarization: -4.97 SS G_CDS: -2.40 Total: -7.37 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.55 -7.42 -36.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260625026.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.581 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds